View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14336_high_22 (Length: 422)
Name: NF14336_high_22
Description: NF14336
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14336_high_22 |
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Alignment Details
Target: chr5 (Bit Score: 369; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 369; E-Value: 0
Query Start/End: Original strand, 17 - 409
Target Start/End: Complemental strand, 15379686 - 15379294
Alignment:
| Q |
17 |
acaatacaacacaaattcactattactagtacttcacaacattttgttgacaaaagttaattcttcccaaccatctcaactactcgtgattgacatttca |
116 |
Q |
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| T |
15379686 |
acaatacaacacaaattcactattactagtacttcacaacattttgttgacacaaattaattcttcccaaccatctcaactactcgtgattgacatttca |
15379587 |
T |
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| Q |
117 |
tatctttatatagctacaggaatcaaaagtatgcacttgggtctaccttggattttagataagataatttgtgtagctcgtgaaatgagaaacccagtaa |
216 |
Q |
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| T |
15379586 |
tatctttatatcgctacaggaatcaaaagtatgcatttgggtctaccttggattttagataagataatttgtgtagctcgtgaaatgagaaacccagtaa |
15379487 |
T |
|
| Q |
217 |
aagttgaagttgaatctaacttgcacgcaaagaaactgaggaagctaaatggggttactgatcttagcctccaatccaagacacttagaacaagtagctc |
316 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15379486 |
aagttgaagttgaatctaacttgcacgcaaagaaactgaggaagctaaatggggtaactgatcttagcctccaatccaagacacttagaacaagtagctc |
15379387 |
T |
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| Q |
317 |
cattcttctaattgttatgggttcaaacatgtatttgacaccttctacctatattaaattataagaaatttataaagtaatgtcaagtataat |
409 |
Q |
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| T |
15379386 |
cattcttctaattgttatgggttcaaacatgtatttgacaccttctacctatattaaattattagaaatttataaagtaatgtcaagtataat |
15379294 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 63; Significance: 3e-27; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 160 - 322
Target Start/End: Original strand, 26436355 - 26436517
Alignment:
| Q |
160 |
taccttggattttagataagataatttgtgtagctcgtgaaatgagaaacccagtaaaagttgaagttgaatctaacttgcacgcaaagaaactgaggaa |
259 |
Q |
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|||||||||| ||||||||||| |||| |||||| |||||||| | || || |||||| ||||||||||| |||||||||||||||||||||||| |
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| T |
26436355 |
taccttggatattagataagatgatttctgtagcacgtgaaattatgaagtgggtgaaagttccagttgaatctagcttgcacgcaaagaaactgaggaa |
26436454 |
T |
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| Q |
260 |
gctaaatggggttactgatcttagcctccaatccaagacacttagaacaagtagctccattct |
322 |
Q |
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|||| |||||| | |||||| |||||||||||||| | | | |||||||| ||||||||||| |
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| T |
26436455 |
actaagtggggtgattgatctcagcctccaatccaaaatagtcagaacaagcagctccattct |
26436517 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 107 - 158
Target Start/End: Original strand, 7706694 - 7706745
Alignment:
| Q |
107 |
tgacatttcatatctttatatagctacaggaatcaaaagtatgcacttgggt |
158 |
Q |
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| T |
7706694 |
tgacatttcatatatttatgtagctacaggaattaaaagtatgtatttgggt |
7706745 |
T |
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