View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14336_high_28 (Length: 347)
Name: NF14336_high_28
Description: NF14336
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14336_high_28 |
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Alignment Details
Target: chr5 (Bit Score: 233; Significance: 1e-129; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 16 - 331
Target Start/End: Original strand, 4547352 - 4547661
Alignment:
| Q |
16 |
cctaattctccaatttctaaacaaccaaaccatccaccactaaccctaaatccaaaaataaagctacatggatcagacgcggctttcaatcatatatcta |
115 |
Q |
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| T |
4547352 |
cctaattctccaatttctaaacaaccaaaccatccaccactaaccctaaatccaaaaataaagctacatggatcagacgccgctttcaatcatatatcta |
4547451 |
T |
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| Q |
116 |
tcaaactcattaataatattgtaatattgtgctaataatcaaagataaggnnnnnnn--ctgaccagatgattgacgatgtgcgatccagaagtatttcc |
213 |
Q |
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|||||||||||||||||||||| |||||||||||||||||| | ||||||||||||||||| ||||||||||||||||||||||| |
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| T |
4547452 |
tcaaactcattaataatattgt--------gctaataatcaaagataacgagaaaaaaactgaccagatgattgacaatgtgcgatccagaagtatttcc |
4547543 |
T |
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| Q |
214 |
tcttgaattacaaaaccattttcttcacgaaggcacattacacctaacaacacaggcaggatttgaaactccacaataacgacaagcatgttcagtaaaa |
313 |
Q |
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||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4547544 |
tcttgaattacaaaaccattttcgacacgaaggcacattacacctaacaacacaggcaggatttgaaactccacaataacgacaagcatgttcagtaaaa |
4547643 |
T |
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| Q |
314 |
tcccctttcccaaattca |
331 |
Q |
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|||||||| ||||||||| |
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| T |
4547644 |
tccccttttccaaattca |
4547661 |
T |
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