View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14336_high_30 (Length: 339)

Name: NF14336_high_30
Description: NF14336
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14336_high_30
NF14336_high_30
[»] chr6 (1 HSPs)
chr6 (19-330)||(35176331-35176636)
[»] chr5 (1 HSPs)
chr5 (19-211)||(42909133-42909318)
[»] chr7 (3 HSPs)
chr7 (167-305)||(11695693-11695838)
chr7 (19-75)||(26854962-26855018)
chr7 (236-295)||(34369219-34369279)
[»] chr3 (2 HSPs)
chr3 (220-295)||(52173354-52173424)
chr3 (236-295)||(52175338-52175397)
[»] chr2 (2 HSPs)
chr2 (167-305)||(33474755-33474900)
chr2 (103-151)||(35411195-35411243)
[»] chr1 (3 HSPs)
chr1 (167-305)||(50137916-50138061)
chr1 (168-211)||(43316528-43316573)
chr1 (167-211)||(51719780-51719825)
[»] chr8 (2 HSPs)
chr8 (167-211)||(43942735-43942780)
chr8 (261-305)||(43942668-43942712)
[»] scaffold0027 (1 HSPs)
scaffold0027 (261-305)||(18434-18478)


Alignment Details
Target: chr6 (Bit Score: 212; Significance: 1e-116; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 19 - 330
Target Start/End: Original strand, 35176331 - 35176636
Alignment:
Q  19 attattatatttagatggttaagatctattaccggtaacttgttatcaactttttgtagttgtagttttgtctacccnnnnnnngtgaccccacctatga 118  Q
    |||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||      ||||| ||||       ||||| |||| |||||    
T  35176331 attattatatttggatggttaagatttattaccggtaacttgttatcaactttttgtagtt------ttgtccacccaaaaaa-gtgacaccacttatga 35176423  T
Q  119 attgtttttgattaaacttattaatgggtttttgagcttatttgtgacattcatgtgttcttcaagaatcttcatcttcatcaattttttcttaaaaatt 218  Q
    ||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  35176424 attgtttatgattaaacttattaatgggcttttgagcttatttgtgacattcatgtgttcttcaagaatcttcatctgcatcaattttttcttaaaaatt 35176523  T
Q  219 cagatctgaaaaatcacaaccacaaccacaa-aaaatgttcatatctgaaaaaccaccacaacagtaccacatcctttacttcatatccacagtacacgt 317  Q
    ||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||    
T  35176524 cagatttgaaaaatcacaaccacaaccacaagaaaatgttcatatctgaaaaaccaccgcaacagtaccacatccttttcttcatatccacagtacacgt 35176623  T
Q  318 tatttagtattat 330  Q
    |||||||||||||    
T  35176624 tatttagtattat 35176636  T

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Target: chr5 (Bit Score: 89; Significance: 7e-43; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 19 - 211
Target Start/End: Original strand, 42909133 - 42909318
Alignment:
Q  19 attattatatttagatggttaagatctattaccggtaacttgttatcaactttttgtagttgtagttttgtctacccnnnnnnngtgaccccacctatga 118  Q
    |||||||||||| ||||||||| |||||||||| |||||||||||||||||||||||||||      ||||||||         ||||||||||||||||    
T  42909133 attattatatttggatggttaaaatctattaccagtaacttgttatcaactttttgtagtt------ttgtctacaaaaacacagtgaccccacctatga 42909226  T
Q  119 attgtttttgattaaacttattaatgggtttttgagcttatttgtgacattcatgtgttcttcaagaatcttcatcttcatcaattttttctt 211  Q
    ||| ||| ||||||||| ||||||||||||||||||||||| |||   |||||||||||||| |||||||||||||||||||||||| |||||    
T  42909227 attatttatgattaaacctattaatgggtttttgagcttatctgttgtattcatgtgttctt-aagaatcttcatcttcatcaatttgttctt 42909318  T

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Target: chr7 (Bit Score: 47; Significance: 8e-18; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 167 - 305
Target Start/End: Complemental strand, 11695838 - 11695693
Alignment:
Q  167 attcatgtgttcttcaa-gaatcttcatcttcatcaattttttctt---aaaaattcagatctgaaaaatc---acaaccacaaccacaa-aaaatgttc 258  Q
    |||||||||||||| || ||||||||||||| | ||||||||||||   ||||||||||||||  ||| ||   | |||||||||||||| |||||||||    
T  11695838 attcatgtgttctttaaagaatcttcatctttaccaattttttcttcctaaaaattcagatctttaaa-tctgaaaaaccacaaccacaagaaaatgttc 11695740  T
Q  259 atatctgaaaaaccaccacaacagtaccacatcctttacttcatatc 305  Q
    || | |||||||||||||||||  ||||||||||||| ||| |||||    
T  11695739 atttttgaaaaaccaccacaaccttaccacatccttttcttaatatc 11695693  T

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Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 19 - 75
Target Start/End: Original strand, 26854962 - 26855018
Alignment:
Q  19 attattatatttagatggttaagatctattaccggtaacttgttatcaactttttgt 75  Q
    |||||||||||| || |||||||||| ||||||| | || |||||||||||||||||    
T  26854962 attattatatttggacggttaagatcaattaccgattacctgttatcaactttttgt 26855018  T

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Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 236 - 295
Target Start/End: Complemental strand, 34369279 - 34369219
Alignment:
Q  236 aaccacaaccacaa-aaaatgttcatatctgaaaaaccaccacaacagtaccacatccttt 295  Q
    ||||||||| |||| ||||||||||||||| |||||| ||||||| | |||||||||||||    
T  34369279 aaccacaactacaagaaaatgttcatatctaaaaaactaccacaataataccacatccttt 34369219  T

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Target: chr3 (Bit Score: 44; Significance: 5e-16; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 220 - 295
Target Start/End: Original strand, 52173354 - 52173424
Alignment:
Q  220 agatctgaaaaatcacaaccacaaccacaaaaaatgttcatatctgaaaaaccaccacaacagtaccacatccttt 295  Q
    ||||||||||||||||||||||||     |||||||||||||||| |||||||||||||| | |||||||||||||    
T  52173354 agatctgaaaaatcacaaccacaa-----aaaaatgttcatatctaaaaaaccaccacaataataccacatccttt 52173424  T

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Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 236 - 295
Target Start/End: Original strand, 52175338 - 52175397
Alignment:
Q  236 aaccacaaccacaa-aaaatgttcatatctgaaaaaccaccacaacagtaccacatccttt 295  Q
    |||||||||||||| ||||||||||||||| |||||||||||||| | |||||||||||||    
T  52175338 aaccacaaccacaagaaaatgttcatatct-aaaaaccaccacaataataccacatccttt 52175397  T

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Target: chr2 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 167 - 305
Target Start/End: Complemental strand, 33474900 - 33474755
Alignment:
Q  167 attcatgtgttcttcaa-gaatcttcatcttcatcaattttttct---taaaaattcagatctgaaaaatc---acaaccacaaccac-aaaaaatgttc 258  Q
    ||||||||||||||||| ||||||||||||| | |||||||||||   |||||||||||||||   |||||   | || ||||||||| |||||||||||    
T  33474900 attcatgtgttcttcaaagaatcttcatctttaccaattttttctttctaaaaattcagatct-ttaaatctgaaaaagcacaaccacaaaaaaatgttc 33474802  T
Q  259 atatctgaaaaaccaccacaacagtaccacatcctttacttcatatc 305  Q
    || | || ||||||||||||||  ||||||||||||| ||| |||||    
T  33474801 atttttggaaaaccaccacaaccttaccacatccttttcttaatatc 33474755  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 103 - 151
Target Start/End: Complemental strand, 35411243 - 35411195
Alignment:
Q  103 gtgaccccacctatgaattgtttttgattaaacttattaatgggttttt 151  Q
    ||||||| ||||||||||||||| | ||||||||  |||||||||||||    
T  35411243 gtgaccctacctatgaattgtttataattaaactagttaatgggttttt 35411195  T

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Target: chr1 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 167 - 305
Target Start/End: Complemental strand, 50138061 - 50137916
Alignment:
Q  167 attcatgtgttcttcaa-gaatcttcatcttcatcaattttttct---taaaaattcagatctgaaaaatc---acaaccacaaccac-aaaaaatgttc 258  Q
    ||||||||||||||||| ||||||||||||| | |||||||||||   |||||||||||||||   |||||   | || ||||||||| |||||||||||    
T  50138061 attcatgtgttcttcaaagaatcttcatctttaccaattttttctttctaaaaattcagatct-ttaaatctgaaaaagcacaaccacaaaaaaatgttc 50137963  T
Q  259 atatctgaaaaaccaccacaacagtaccacatcctttacttcatatc 305  Q
    || | || ||||||||||||||  ||||||||||||| ||| |||||    
T  50137962 atttttggaaaaccaccacaaccttaccacatccttttcttaatatc 50137916  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 168 - 211
Target Start/End: Original strand, 43316528 - 43316573
Alignment:
Q  168 ttcatgtgttcttcaa--gaatcttcatcttcatcaattttttctt 211  Q
    ||||||||||||||||  ||||||||||||||| ||||||||||||    
T  43316528 ttcatgtgttcttcaaaagaatcttcatcttcaccaattttttctt 43316573  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 167 - 211
Target Start/End: Original strand, 51719780 - 51719825
Alignment:
Q  167 attcatgtgttcttcaa-gaatcttcatcttcatcaattttttctt 211  Q
    ||||||||||||||||| |||||||||| |||| ||||||||||||    
T  51719780 attcatgtgttcttcaaagaatcttcatattcaccaattttttctt 51719825  T

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Target: chr8 (Bit Score: 34; Significance: 0.0000000005; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 167 - 211
Target Start/End: Complemental strand, 43942780 - 43942735
Alignment:
Q  167 attcatgtgttcttcaa-gaatcttcatcttcatcaattttttctt 211  Q
    ||||||||||||||||| ||||||||||||||| ||||||||||||    
T  43942780 attcatgtgttcttcaaagaatcttcatcttcaccaattttttctt 43942735  T

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Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 261 - 305
Target Start/End: Complemental strand, 43942712 - 43942668
Alignment:
Q  261 atctgaaaaaccaccacaacagtaccacatcctttacttcatatc 305  Q
    ||||| ||||||||||||||||||||||||||||| ||| |||||    
T  43942712 atctggaaaaccaccacaacagtaccacatccttttcttaatatc 43942668  T

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Target: scaffold0027 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0027
Description:

Target: scaffold0027; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 261 - 305
Target Start/End: Original strand, 18434 - 18478
Alignment:
Q  261 atctgaaaaaccaccacaacagtaccacatcctttacttcatatc 305  Q
    |||||||||||||||||||||||||||||| |||| ||| |||||    
T  18434 atctgaaaaaccaccacaacagtaccacattcttttcttaatatc 18478  T

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