View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14336_high_41 (Length: 258)
Name: NF14336_high_41
Description: NF14336
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14336_high_41 |
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Alignment Details
Target: chr1 (Bit Score: 150; Significance: 2e-79; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 21 - 254
Target Start/End: Original strand, 41414495 - 41414722
Alignment:
| Q |
21 |
tatattttaacattccctcgtaacaaagcaatttgctcacatgattcaagttgtatggtaaccnnnnnnncatgattcaagttattaatttaactcttaa |
120 |
Q |
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| T |
41414495 |
tatattttaacattccctcgtaacaaagcaatttgctcacatgattcaagttgtatggtaaccaaaaaaacatgattcaagttattaatttaactcttaa |
41414594 |
T |
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| Q |
121 |
ctcataaaaggtgttaatttaagtgttattttaaattataatatatttcttgaccagtccggtgtttaaaactaattnnnnnnnnnnnnnncctaagaat |
220 |
Q |
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| T |
41414595 |
ctcataaaagatgttaatttaagtgttattttaaattataatatattttttgaccagtccggtgtttaaaactaatt------aaaaaaaacctaagaat |
41414688 |
T |
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| Q |
221 |
ccatctactttttatccatccggcaagaaaccta |
254 |
Q |
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| T |
41414689 |
ccatctactttctatccatccggtaagaaaccta |
41414722 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 29
Target Start/End: Original strand, 45430268 - 45430296
Alignment:
| Q |
1 |
acaatttgggacggagggagtatatttta |
29 |
Q |
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| T |
45430268 |
acaatttgggacggagggagtatatttta |
45430296 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 21634831 - 21634864
Alignment:
| Q |
1 |
acaatttgggacggagggagtatattttaacatt |
34 |
Q |
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| T |
21634831 |
acaatttgggacggagggagtatatttttacatt |
21634864 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 30
Target Start/End: Complemental strand, 8769519 - 8769490
Alignment:
| Q |
1 |
acaatttgggacggagggagtatattttaa |
30 |
Q |
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| T |
8769519 |
acaatttgggacggagggagtatattttaa |
8769490 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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