View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14336_high_42 (Length: 257)
Name: NF14336_high_42
Description: NF14336
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14336_high_42 |
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Alignment Details
Target: chr1 (Bit Score: 225; Significance: 1e-124; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 1 - 244
Target Start/End: Original strand, 52807323 - 52807569
Alignment:
| Q |
1 |
atgttttttcgggacgacaagcctattgagtttaccaacatcacttggtgttaattctttttgaaaaagtagttgtgtgcaagaaaattgttcctcaccc |
100 |
Q |
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| T |
52807323 |
atgttttttcgggacgacaagcctattgagtttaccaacatcacttggtgttaattctttttgaaaaagtagttgtgtgcaagaaaattgttcctcatcc |
52807422 |
T |
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| Q |
101 |
ttcacccctataacaacaccttctttgcctgcaccttgg---ctttcattatttctaagaaatgttgttgcaaaattagaggggtatgttccatttctaa |
197 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52807423 |
ttcacccctataacaacaccttctttgcctgcaccttggcgcctttcattatttctaagaaatgttgttgcaaaattagaggggtatgttccatttctaa |
52807522 |
T |
|
| Q |
198 |
tcatgatcataattgtttccatgttatattgactttgaaacataggt |
244 |
Q |
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||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
52807523 |
tcatgatcataattgtttccatgctatattgactttgaaacataggt |
52807569 |
T |
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