View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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	Query
	Query hiting target	Query hiting target's complemental strand
	Query's complemental strand hiting target	Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14336_high_47 (Length: 242)

Name: NF14336_high_47

Description: NF14336

Algorithm: BLASTN 2.2.26 [Sep-21-2011]

Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)

[»] NF14336_high_47

[»] chr3 (6 HSPs)

Alignment Details

Target: chr3 (Bit Score: 195; Significance: 1e-106; HSPs: 6)

Name: chr3

Description:

Target: chr3; HSP #1

Raw Score: 195; E-Value: 1e-106

Query Start/End: Original strand, 9 - 242

Target Start/End: Original strand, 33607875 - 33608111

Alignment:

Q	9	agcacagacttaaactaa---ctgaaatccatagacaaaacaaaaaaggtatttcaaaaatggctggtgtggtatttgctgtggatagtacaccagatgc	105	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	33607875	agcacagacttaaactaattactgaaatccatagaagaaaaaaaaaaggtatttcaaaaatggctggtggggtatttgctgtggatagtacaccagatgc	33607974	T

Q	106	tgctatcaatattggtggcaagttaacactttcaatcatcattacatgcatcgttgctgcttccagtggtcttctttttggatatgacattggaatttca	205	Q
		\|\|\|\| \|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	33607975	tgctgtcaatattgttggcaagttaacactttcaatcatcattacatgcatcgttgctgcttccagtggtcttctttttggatatgacattggaatttca	33608074	T

Q	206	ggttcactttgttacaaatgaattgtgtcaccttatt	242	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|
T	33608075	ggttcactttgttacaaatgaattgtgacaccttatt	33608111	T

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Target: chr3; HSP #2

Raw Score: 59; E-Value: 4e-25

Query Start/End: Original strand, 112 - 210

Target Start/End: Original strand, 33626275 - 33626373

Alignment:

Q	112	caatattggtggcaagttaacactttcaatcatcattacatgcatcgttgctgcttccagtggtcttctttttggatatgacattggaatttcaggttc	210	Q
		\|\|\|\| \|\|\|\|\| \|\|\|\| \|\|\|\|\|\| \| \| \|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	33626275	caatgttggtagcaaattaacattcttaatcatcattacctgcatagttgctgcttccagtggccttctttttggatatgacatcggaatttcaggttc	33626373	T

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Target: chr3; HSP #3

Raw Score: 57; E-Value: 6e-24

Query Start/End: Original strand, 105 - 209

Target Start/End: Original strand, 33615773 - 33615877

Alignment:

Q	105	ctgctatcaatattggtggcaagttaacactttcaatcatcattacatgcatcgttgctgcttccagtggtcttctttttggatatgacattggaatttc	204	Q
		\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\| \|\|\|\|\|\|\|\| \|\|\| \|\|\|\| \|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\| \| \|\|\| \|\|\|\|
T	33615773	ctgccatcaatattggtggcaagttaacactctcaatcatcattacctgcatagttgctgcatccggtggccttctttatggatatgatctcggagtttc	33615872	T

Q	205	aggtt	209	Q
		\|\|\|\|\|
T	33615873	aggtt	33615877	T

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Target: chr3; HSP #4

Raw Score: 37; E-Value: 0.000000000005

Query Start/End: Original strand, 129 - 209

Target Start/End: Original strand, 33594103 - 33594183

Alignment:

Q	129	taacactttcaatcatcattacatgcatcgttgctgcttccagtggtcttctttttggatatgacattggaatttcaggtt	209	Q
		\|\|\|\|\|\|\| \|\|\| \| \|\|\|\|\|\|\|\| \|\| \|\|\|\|\|\|\|\|\|\|\| \|\| \|\|\|\|\| \|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|
T	33594103	taacactctcagttatcattacttgtatcgttgctgcatctagtggactcatttttggatatgacattgggatttcaggtt	33594183	T

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Target: chr3; HSP #5

Raw Score: 37; E-Value: 0.000000000005

Query Start/End: Original strand, 129 - 209

Target Start/End: Original strand, 33601234 - 33601314

Alignment:

Q	129	taacactttcaatcatcattacatgcatcgttgctgcttccagtggtcttctttttggatatgacattggaatttcaggtt	209	Q
		\|\|\|\|\|\|\| \|\|\| \| \|\|\|\|\|\|\|\| \|\| \|\|\|\|\|\|\|\|\|\|\| \|\| \|\|\|\|\| \|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|
T	33601234	taacactctcagttatcattacttgtatcgttgctgcatctagtggactcatttttggatatgacattgggatttcaggtt	33601314	T

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Target: chr3; HSP #6

Raw Score: 35; E-Value: 0.00000000008

Query Start/End: Original strand, 143 - 209

Target Start/End: Original strand, 33586945 - 33587011

Alignment:

Q	143	atcattacatgcatcgttgctgcttccagtggtcttctttttggatatgacattggaatttcaggtt	209	Q
		\|\|\|\|\|\|\|\| \|\| \|\|\|\|\|\|\|\|\|\|\| \|\| \|\|\|\|\| \|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|
T	33586945	atcattacttgtatcgttgctgcatctagtggactcatttttggatatgacattgggatttcaggtt	33587011	T

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