View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14336_high_55 (Length: 219)

Name: NF14336_high_55
Description: NF14336
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14336_high_55
NF14336_high_55
[»] chr2 (14 HSPs)
chr2 (9-219)||(32310850-32311060)
chr2 (9-219)||(32799263-32799473)
chr2 (64-219)||(32813447-32813602)
chr2 (9-116)||(32306720-32306827)
chr2 (127-219)||(32792644-32792736)
chr2 (143-219)||(32563790-32563866)
chr2 (9-80)||(32792734-32792805)
chr2 (11-93)||(32563887-32563968)
chr2 (11-89)||(32786342-32786420)
chr2 (140-219)||(28213756-28213835)
chr2 (11-77)||(28213918-28213984)
chr2 (140-219)||(32785131-32785210)
chr2 (13-77)||(28222302-28222366)
chr2 (170-219)||(28222469-28222518)


Alignment Details
Target: chr2 (Bit Score: 207; Significance: 1e-113; HSPs: 14)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 9 - 219
Target Start/End: Original strand, 32310850 - 32311060
Alignment:
Q  9 tagtttagcaaatttgttctcttcctatgtaagtttctcatacacatttgagggtagttttggccatgtaaagtgacagctgttacagaatttattgatt 108  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32310850 tagtttagcaaatttgttctcttcctatgtaagtttctcatacacatttgagggtagttttggccatgtaaagtgacagctgttacagaatttattgatt 32310949  T
Q  109 ttgatggcactgggttgaaaaatgtttactttagtgttgcaaggctgcaataaatataaacaaatcaaagtgttctgttatgttttattaaaacttggat 208  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  32310950 ttgatggcactgggttgaaaaatgtttactttagtgttgcaaggctgcaataaatataaacaagtcaaagtgttctgttatgttttattaaaacttggat 32311049  T
Q  209 tccaaggtatt 219  Q
    |||||||||||    
T  32311050 tccaaggtatt 32311060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 9 - 219
Target Start/End: Complemental strand, 32799473 - 32799263
Alignment:
Q  9 tagtttagcaaatttgttctcttcctatgtaagtttctcatacacatttgagggtagttttggccatgtaaagtgacagctgttacagaatttattgatt 108  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||| |||||||||  |||    
T  32799473 tagtttagcaaatttgttctcttcctatgtaagtttctcatacacattttagggtagttttggccatgtaaagtgacagctattatagaatttataaatt 32799374  T
Q  109 ttgatggcactgggttgaaaaatgtttactttagtgttgcaaggctgcaataaatataaacaaatcaaagtgttctgttatgttttattaaaacttggat 208  Q
    ||  ||||||||  || ||| ||||||||| |||||||||||||||||||||||||| |||||||||||||||||| |||||  |||||||||||| |||    
T  32799373 tttgtggcactgttttaaaatatgtttactctagtgttgcaaggctgcaataaatatcaacaaatcaaagtgttcttttatgccttattaaaacttagat 32799274  T
Q  209 tccaaggtatt 219  Q
    |||||||||||    
T  32799273 tccaaggtatt 32799263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 128; E-Value: 2e-66
Query Start/End: Original strand, 64 - 219
Target Start/End: Complemental strand, 32813602 - 32813447
Alignment:
Q  64 agttttggccatgtaaagtgacagctgttacagaatttattgattttgatggcactgggttgaaaaatgtttactttagtgttgcaaggctgcaataaat 163  Q
    ||||||||||||||||| |||||  ||||||||||||||||||||||||||| |||| ||| |||| |||||||||||||||||||||||||||||||||    
T  32813602 agttttggccatgtaaaatgacaaatgttacagaatttattgattttgatggaactgtgttaaaaactgtttactttagtgttgcaaggctgcaataaat 32813503  T
Q  164 ataaacaaatcaaagtgttctgttatgttttattaaaacttggattccaaggtatt 219  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32813502 ataaacaaatcaaagtgttctgttatgttttattaaaacttggattccaaggtatt 32813447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 9 - 116
Target Start/End: Original strand, 32306720 - 32306827
Alignment:
Q  9 tagtttagcaaatttgttctcttcctatgtaagtttctcatacacatttgagggtagttttggccatgtaaagtgacagctgttacagaatttattgatt 108  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||| ||||||||||||||||||    
T  32306720 tagtttagcaaatttgttctcttcctatgtaagtttctcatacacattttagggtagttttggccatgtaaagttacagcttttacagaatttattgatt 32306819  T
Q  109 ttgatggc 116  Q
    ||||||||    
T  32306820 ttgatggc 32306827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 127 - 219
Target Start/End: Complemental strand, 32792736 - 32792644
Alignment:
Q  127 aaaatgtttactttagtgttgcaaggctgcaataaatataaacaaatcaaagtgttctgttatgttttattaaaacttggattccaaggtatt 219  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||    
T  32792736 aaaatgtttactatagtgttgcaaggctgcaataaatataaacaaatcaaattgttctgttatgctttattaaaacttggattccaaggtatt 32792644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 143 - 219
Target Start/End: Complemental strand, 32563866 - 32563790
Alignment:
Q  143 tgttgcaaggctgcaataaatataaacaaatcaaagtgttctgttatgttttattaaaacttggattccaaggtatt 219  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  32563866 tgttgcaaggctgcaataaatataaacaaatcaaagtgttctgttatgctttattaaaacttggattccaaggtatt 32563790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 9 - 80
Target Start/End: Complemental strand, 32792805 - 32792734
Alignment:
Q  9 tagtttagcaaatttgttctcttcctatgtaagtttctcatacacatttgagggtagttttggccatgtaaa 80  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32792805 tagtttatcaaatttgttctcttcctatgtaagtttctcatacacatttgagggtagttttggccatgtaaa 32792734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 11 - 93
Target Start/End: Complemental strand, 32563968 - 32563887
Alignment:
Q  11 gtttagcaaatttgttctcttcctatgtaagtttctcatacacatttgagggtagttttggccatgtaaagtgacagctgtta 93  Q
    |||||| ||||||||| | |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32563968 gtttagaaaatttgtttt-ttccaatgtaagtttctcatacacatttgagggtagttttggccatgtaaagtgacagctgtta 32563887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 11 - 89
Target Start/End: Complemental strand, 32786420 - 32786342
Alignment:
Q  11 gtttagcaaatttgttctcttcctatgtaagtttctcatacacatttgagggtagttttggccatgtaaagtgacagct 89  Q
    |||||||||||||||||||||||||||||||||||||| ||| |||| ||||| |||||||||||||||||||||||||    
T  32786420 gtttagcaaatttgttctcttcctatgtaagtttctcacacatattttagggtggttttggccatgtaaagtgacagct 32786342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 140 - 219
Target Start/End: Complemental strand, 28213835 - 28213756
Alignment:
Q  140 tagtgttgcaaggctgcaataaatataaacaaatcaaagtgttctgttatgttttattaaaacttggattccaaggtatt 219  Q
    |||||||||||||||||||||||||| || |||||||||||||||||||||  ||| |||||||||||||||||||||||    
T  28213835 tagtgttgcaaggctgcaataaatatcaataaatcaaagtgttctgttatgccttaataaaacttggattccaaggtatt 28213756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 11 - 77
Target Start/End: Complemental strand, 28213984 - 28213918
Alignment:
Q  11 gtttagcaaatttgttctcttcctatgtaagtttctcatacacatttgagggtagttttggccatgt 77  Q
    |||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||    
T  28213984 gtttagcaaatttgttctcttcttatgtaagtttctcacacacatttgagggtagttttggccatgt 28213918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 140 - 219
Target Start/End: Complemental strand, 32785210 - 32785131
Alignment:
Q  140 tagtgttgcaaggctgcaataaatataaacaaatcaaagtgttctgttatgttttattaaaacttggattccaaggtatt 219  Q
    |||||||||||||||||| ||||||| ||||||| ||| ||||||||||||  |||||||||||||||||||||||||||    
T  32785210 tagtgttgcaaggctgcagtaaatatcaacaaatgaaaatgttctgttatgccttattaaaacttggattccaaggtatt 32785131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 13 - 77
Target Start/End: Original strand, 28222302 - 28222366
Alignment:
Q  13 ttagcaaatttgttctcttcctatgtaagtttctcatacacatttgagggtagttttggccatgt 77  Q
    |||||||||| ||||||||||||||||||||||| | |||||||||| ||||||||| |||||||    
T  28222302 ttagcaaattggttctcttcctatgtaagtttcttacacacatttgatggtagttttagccatgt 28222366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 170 - 219
Target Start/End: Original strand, 28222469 - 28222518
Alignment:
Q  170 aaatcaaagtgttctgttatgttttattaaaacttggattccaaggtatt 219  Q
    |||||||||||||||||||||  ||| |||||||||||||||||||||||    
T  28222469 aaatcaaagtgttctgttatgccttaataaaacttggattccaaggtatt 28222518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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