View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14336_high_8 (Length: 572)
Name: NF14336_high_8
Description: NF14336
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14336_high_8 |
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Alignment Details
Target: chr6 (Bit Score: 241; Significance: 1e-133; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 11 - 270
Target Start/End: Original strand, 10462299 - 10462561
Alignment:
| Q |
11 |
ggagcagagaagaatgtttgggaagttcagtggaaggtttcttcttcctgagaatgctaatgctgatgctgtttcggctgtgtgtcgagatggggtgctt |
110 |
Q |
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| T |
10462299 |
ggagcagcgaagaatgtttgggaagttcagtggaaggtttcttcttcctgagaatgctaatgctgatgctgtttcggctgtgtgtcgagatggggtgctt |
10462398 |
T |
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| Q |
111 |
agtgttactgctctcaagaaattgcctc---ctcagaaccctaacaagcctagaagaactattgtatgcttgaattgaaaactctgttttaaataatgaa |
207 |
Q |
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| T |
10462399 |
actgttactgctctcaagaaattgcctcctcctcagaaccctaacaagcctagaagaactattgtatgcttgaattgaaaactctgttttaaataatgaa |
10462498 |
T |
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| Q |
208 |
tgaatgtagttagtgtgtgagacaatgtgatagatggtttatacttcagttctaagtttatgt |
270 |
Q |
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| T |
10462499 |
tgaatgtagttagtgtgtgagacaatgtgatagatggtttatacttcagttctaagtttatgt |
10462561 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 281 - 527
Target Start/End: Original strand, 10462785 - 10463031
Alignment:
| Q |
281 |
tgtcttccttcgaactcgatcacggtaccttactcagacgacaaatattgtcttattgatgtgtagacataataggtttattagaaccctagacagcaaa |
380 |
Q |
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| T |
10462785 |
tgtcttccttcgaactcgatcacggtaccttactcagacgacaaatattgtcttattgatgtgtaaacataataggtttattagaaccctagacagcaaa |
10462884 |
T |
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| Q |
381 |
tctttgaatattgcannnnnnngctttcaaactgtagttatttgttgcaagtgtgttattggatctttgtatagtagagggattttcaattccagtaatt |
480 |
Q |
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| T |
10462885 |
tctttgaatattgcatttttttgctttcaaactgtagttatttgttgcaagtgtgttattggatctttgtatagtagagggattttgaattccagtaatt |
10462984 |
T |
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| Q |
481 |
ggagaattatgatggtgtagtgaaacaacttggttcgtccaattttt |
527 |
Q |
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| T |
10462985 |
ggagaattatgatggtgtagtgaaacaacttggttcgtccagttttt |
10463031 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 11 - 171
Target Start/End: Complemental strand, 10539828 - 10539665
Alignment:
| Q |
11 |
ggagcagagaagaatgtttgggaagttcagtggaaggtttcttcttcctgagaatgctaatgctgatgctgtttcggctgtgtgtcgagatggggtgctt |
110 |
Q |
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| T |
10539828 |
ggagcaaagaagaaggtttgggaagttcaccggaaggtttcttcttcctcaagatgctaatgctgaagctgtttcggctgcttgtcaagatggggtgttt |
10539729 |
T |
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| Q |
111 |
agtgttactgctctcaagaaattgcct---cctcagaaccctaacaagcctagaagaactattg |
171 |
Q |
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| T |
10539728 |
actgttactgcactcaagaaattgcctcctcctcagaaccctaacaagcatagaagaactattg |
10539665 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 523 - 558
Target Start/End: Original strand, 10471558 - 10471593
Alignment:
| Q |
523 |
tttttatcggagaaatcacattttagtgttgtattt |
558 |
Q |
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| T |
10471558 |
ttttgatcggagaaatcacattttagtgttgtattt |
10471593 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 498 - 545
Target Start/End: Original strand, 14023329 - 14023376
Alignment:
| Q |
498 |
tagtgaaacaacttggttcgtccaatttttatcggagaaatcacattt |
545 |
Q |
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| T |
14023329 |
tagtcaaacaactttgttcgtccaaatttgatcggagaaatcacattt |
14023376 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 277 - 329
Target Start/End: Complemental strand, 10542654 - 10542602
Alignment:
| Q |
277 |
ttattgtcttccttcgaactcgat-cacggtaccttactcagacgacaaatatt |
329 |
Q |
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| T |
10542654 |
ttattctcttcctt-gaactcgatacacggtaccttactcagacaacaaatatt |
10542602 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 46; Significance: 6e-17; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 54 - 141
Target Start/End: Complemental strand, 3744841 - 3744757
Alignment:
| Q |
54 |
cttcctgagaatgctaatgctgatgctgtttcggctgtgtgtcgagatggggtgcttagtgttactgctctcaagaaattgcctcctc |
141 |
Q |
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| T |
3744841 |
cttcctgagaatgctaatactgatgctgtttctgctgtttgtcaagatggggttctgagtgttactgttc---agaaattgcctcctc |
3744757 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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