View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14336_low_1 (Length: 774)
Name: NF14336_low_1
Description: NF14336
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14336_low_1 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 560; Significance: 0; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 560; E-Value: 0
Query Start/End: Original strand, 166 - 757
Target Start/End: Complemental strand, 33715654 - 33715063
Alignment:
| Q |
166 |
ctctatgtataaatatgatggttatcattcaataaaaatatcccttttatgctgttcacataacatattcttttccacgttaaacctttctatatccaac |
265 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
33715654 |
ctctatgtataaatatgatggttatcattcaataaaaatatcccttttatgctgttcacataacatattcttttccacgttaaacctttctataaccaac |
33715555 |
T |
|
| Q |
266 |
aaattatttaatctgaaaaataaaatagtaaaactattcaaatagtgaaaagagcataataccaatattgtcattataaaatcaatgacttgatgtgcaa |
365 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33715554 |
aaattatttaatctgaaaaataaaatagtaaaactattcaaatagtgaaaagagcataataccaatattgtcattataaaatcaatgacttgatgtgcaa |
33715455 |
T |
|
| Q |
366 |
gttattacacaatatggaatcatctacctgcaaaatacaatgaacacccaacaatttagcaggtcaaagcaaatgttcacattctatgtaataaaataag |
465 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33715454 |
gttattacacaatatggaatcatctacctgcaaaatacaatgaacacccaacaatttagcaggtcaaagcaaatgttcacattctatgtaataaaataag |
33715355 |
T |
|
| Q |
466 |
tatttttatgaactttactatgaaatgtataatgacggttaaatgaatattcgtgcagctatcatgcacataccagtaacaaaataaaacaaatggaagt |
565 |
Q |
| |
|
|| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33715354 |
tacttttatgaactttactatgaaatgtataataacggttaaatgaatattcgtgcagctatcatgcacataccagtaacaaaataaaacaaatggaagt |
33715255 |
T |
|
| Q |
566 |
cacattttcaaccaaaacaaaatctaagaaaagtaacatttgaaacattaaaaacttagcttgaaagagcaattccaaatactagcaaactagtttccta |
665 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
33715254 |
cacattttcaaccaaaacaaaatctaagaaaagtaacatttgaaacataaaaaacttagcttgaaagagcaattccaaatactagcaaacaagtttccta |
33715155 |
T |
|
| Q |
666 |
tcgttgtcacagacgaaaacaaggcggtgtcattatttttgtcaatgatggcctcaaaagtatcatcttggcaacagtatcggcagatactt |
757 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
33715154 |
tcgttgtcacagacgaaaacgaggcggtgtcattatttttctcaatgatggcctcaaaagtatcatcttggcaacagtatcggcaaatactt |
33715063 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 177; E-Value: 5e-95
Query Start/End: Original strand, 382 - 757
Target Start/End: Complemental strand, 33709569 - 33709182
Alignment:
| Q |
382 |
gaatcatctacctgcaaaatacaatgaacacccaacaatttagcaggtcaaagcaaatgttcacattctatgtaataaaataagtatttttatgaacttt |
481 |
Q |
| |
|
|||||||| || || |||||||||||||||| | ||||||||||| |||||| |||||||||||| ||||||||||||| |||||||||||||||| | |
|
|
| T |
33709569 |
gaatcatccacgtgaaaaatacaatgaacactcgacaatttagcacgtcaaaaggaatgttcacattttatgtaataaaatcagtatttttatgaactct |
33709470 |
T |
|
| Q |
482 |
actatgaaatgtat---------aatgacggttaaatgaatattcgtgcagctatcatgcacataccagtaacaaaataaaacaaatggaag-tcacatt |
571 |
Q |
| |
|
|||||||||||||| ||| || |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
33709469 |
actatgaaatgtattattcaaataataacaattaaatgaatattcgtgcagttatcatgcacataccagtaacaaaataaaacaaatggaagttcacatt |
33709370 |
T |
|
| Q |
572 |
ttcaaccaaaacaaaatctaagaaaagtaacatttgaaacattaaaaacttagcttgaa-agagcaattcc-aaatactagcaaactagtttcctatc-g |
668 |
Q |
| |
|
||||||||||| |||||| ||||||||||||||||||||||| |||||| ||| | ||| | |||| |||| |||||||||||||| ||||||||||| |
|
|
| T |
33709369 |
ttcaaccaaaa-aaaatccaagaaaagtaacatttgaaacataaaaaacatagttcgaacatagcagttccaaaatactagcaaacaagtttcctatcat |
33709271 |
T |
|
| Q |
669 |
ttgtcacagacgaaaacaaggcggtgtcattatttttgtcaatgatggcctcaaaagtatcatcttggcaacagtatcggcagatactt |
757 |
Q |
| |
|
||||||||||| ||| |||||||| ||||||| | |||||||||||||||||||||||||||||||||||||||| ||||| |||| |
|
|
| T |
33709270 |
ttgtcacagactcaaaagaggcggtgcaattatttctctcaatgatggcctcaaaagtatcatcttggcaacagtatcagcagacactt |
33709182 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 1 - 100
Target Start/End: Complemental strand, 33715819 - 33715720
Alignment:
| Q |
1 |
gttgactggatgactatgaaactactgttttaagttcctaatttttaggatctattatctttttatgttattgttgagaactccatgatatgctctattt |
100 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||| ||||||||||||||| |
|
|
| T |
33715819 |
gttgactagatgactatgaaactactgttttaagttcctaatttgtaggatctattatctttttatgttattgttagaaactctctgatatgctctattt |
33715720 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 270 - 361
Target Start/End: Complemental strand, 37582803 - 37582710
Alignment:
| Q |
270 |
tatttaatctgaaaaataaaatagtaaaa-ctattcaaatagtgaaaagagcataatacc-aatattgtcattataaaatcaatgacttgatgt |
361 |
Q |
| |
|
|||||||||||||||||||||||| |||| || ||||||||||||||||||||| | ||| ||||||| ||||||||| ||||||||||||||| |
|
|
| T |
37582803 |
tatttaatctgaaaaataaaataggaaaagctcttcaaatagtgaaaagagcatgacacccaatattggcattataaagtcaatgacttgatgt |
37582710 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 688 - 757
Target Start/End: Complemental strand, 37582495 - 37582426
Alignment:
| Q |
688 |
ggcggtgtcattatttttgtcaatgatggcctcaaaagtatcatcttggcaacagtatcggcagatactt |
757 |
Q |
| |
|
||||||| ||| ||||| ||||||||||||||||||||||||||||||||||| |||| ||||| |||| |
|
|
| T |
37582495 |
ggcggtgctattgtttttctcaatgatggcctcaaaagtatcatcttggcaacaatatcagcagacactt |
37582426 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 90; Significance: 4e-43; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 90; E-Value: 4e-43
Query Start/End: Original strand, 1 - 106
Target Start/End: Complemental strand, 28697322 - 28697217
Alignment:
| Q |
1 |
gttgactggatgactatgaaactactgttttaagttcctaatttttaggatctattatctttttatgttattgttgagaactccatgatatgctctattt |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||| |
|
|
| T |
28697322 |
gttgactggatgactatgaaactactgttttaagttcctaatttttaggatctattatctttttatgttattgttaggaactctctgatatgctctattt |
28697223 |
T |
|
| Q |
101 |
gttacc |
106 |
Q |
| |
|
|||||| |
|
|
| T |
28697222 |
gttacc |
28697217 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 87; E-Value: 3e-41
Query Start/End: Original strand, 169 - 267
Target Start/End: Complemental strand, 28697154 - 28697057
Alignment:
| Q |
169 |
tatgtataaatatgatggttatcattcaataaaaatatcccttttatgctgttcacataacatattcttttccacgttaaacctttctatatccaacaa |
267 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
28697154 |
tatgtataaatatgatggttatcattcaataaaaatattccttttatgctgttcacataacatatt-ttttccacgttaaacctttctatatccaacaa |
28697057 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 82; E-Value: 3e-38
Query Start/End: Original strand, 169 - 266
Target Start/End: Complemental strand, 28699421 - 28699325
Alignment:
| Q |
169 |
tatgtataaatatgatggttatcattcaataaaaatatcccttttatgctgttcacataacatattcttttccacgttaaacctttctatatccaaca |
266 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
28699421 |
tatgtataaatatgatggttatcattcaataaaaatattccttttatgttgttcacataacatatt-ttttccacgttaaacctttctatatccaaca |
28699325 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 78; E-Value: 6e-36
Query Start/End: Original strand, 1 - 106
Target Start/End: Complemental strand, 28699589 - 28699484
Alignment:
| Q |
1 |
gttgactggatgactatgaaactactgttttaagttcctaatttttaggatctattatctttttatgttattgttgagaactccatgatatgctctattt |
100 |
Q |
| |
|
|||||||||||||||||||||| ||| ||||||||||||||| |||||||||||||||||||||||||||||||| |||||| ||||||||||||||| |
|
|
| T |
28699589 |
gttgactggatgactatgaaaccactattttaagttcctaatctttaggatctattatctttttatgttattgttaggaactctctgatatgctctattt |
28699490 |
T |
|
| Q |
101 |
gttacc |
106 |
Q |
| |
|
|||||| |
|
|
| T |
28699489 |
gttacc |
28699484 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 87; Significance: 3e-41; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 87; E-Value: 3e-41
Query Start/End: Original strand, 170 - 268
Target Start/End: Original strand, 628451 - 628548
Alignment:
| Q |
170 |
atgtataaatatgatggttatcattcaataaaaatatcccttttatgctgttcacataacatattcttttccacgttaaacctttctatatccaacaaa |
268 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
628451 |
atgtataaatatgatggttatcattcaataaaaaaatcccttttatgctgttcacataacatatt-ttttccacgttaaacctttctatatccaacaaa |
628548 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 68; E-Value: 6e-30
Query Start/End: Original strand, 1 - 106
Target Start/End: Original strand, 628280 - 628387
Alignment:
| Q |
1 |
gttgactggatgactatgaaactactgttttaagttcctaatttttaggatct-attatc-tttttatgttattgttgagaactccatgatatgctctat |
98 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||||||||||| | |||| |||||||||||||||| |||||| ||||||||||||| |
|
|
| T |
628280 |
gttgactggatgactatgaaactacggttttaagttcctaatttttaggatctaagtatcttttttatgttattgttaggaactctctgatatgctctat |
628379 |
T |
|
| Q |
99 |
ttgttacc |
106 |
Q |
| |
|
|||||||| |
|
|
| T |
628380 |
ttgttacc |
628387 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 66; E-Value: 9e-29
Query Start/End: Original strand, 185 - 266
Target Start/End: Original strand, 626171 - 626251
Alignment:
| Q |
185 |
ggttatcattcaataaaaatatcccttttatgctgttcacataacatattcttttccacgttaaacctttctatatccaaca |
266 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||| |
|
|
| T |
626171 |
ggttatcattcaataaaaaaatcccttttatgctgttcacataacatatt-ttttccacgttaaatctttctatatccaaca |
626251 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 525 - 565
Target Start/End: Complemental strand, 18724811 - 18724771
Alignment:
| Q |
525 |
tatcatgcacataccagtaacaaaataaaacaaatggaagt |
565 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
18724811 |
tatcatgcacaaaccagtaacaaaataaaacaaatggaagt |
18724771 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 86; Significance: 1e-40; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 86; E-Value: 1e-40
Query Start/End: Original strand, 169 - 266
Target Start/End: Original strand, 27712205 - 27712301
Alignment:
| Q |
169 |
tatgtataaatatgatggttatcattcaataaaaatatcccttttatgctgttcacataacatattcttttccacgttaaacctttctatatccaaca |
266 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
27712205 |
tatgtataaatatgatggttatcattcaataaaaatattccttttatgctgttcacataacatatt-ttttccacgttaaacctttctatatccaaca |
27712301 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 75; E-Value: 4e-34
Query Start/End: Original strand, 4 - 106
Target Start/End: Original strand, 27712040 - 27712142
Alignment:
| Q |
4 |
gactggatgactatgaaactactgttttaagttcctaatttttaggatctattatctttttatgttattgttgagaactccatgatatgctctatttgtt |
103 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| || | |||| |||||||||||||||||| |
|
|
| T |
27712040 |
gactggatgactatgaaactactgttttaagttcctaaattttaggatctattatctttttatgttattattaggcactctctgatatgctctatttgtt |
27712139 |
T |
|
| Q |
104 |
acc |
106 |
Q |
| |
|
||| |
|
|
| T |
27712140 |
acc |
27712142 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 86; Significance: 1e-40; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 86; E-Value: 1e-40
Query Start/End: Original strand, 1 - 106
Target Start/End: Original strand, 28180306 - 28180411
Alignment:
| Q |
1 |
gttgactggatgactatgaaactactgttttaagttcctaatttttaggatctattatctttttatgttattgttgagaactccatgatatgctctattt |
100 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||| |
|
|
| T |
28180306 |
gttgactggatgactatgaaactactgatttaagttcctaatttttaggatctattatctttttatgttattgttaggaactctctgatatgctctattt |
28180405 |
T |
|
| Q |
101 |
gttacc |
106 |
Q |
| |
|
|||||| |
|
|
| T |
28180406 |
gttacc |
28180411 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 79; E-Value: 2e-36
Query Start/End: Original strand, 169 - 263
Target Start/End: Original strand, 28180474 - 28180567
Alignment:
| Q |
169 |
tatgtataaatatgatggttatcattcaataaaaatatcccttttatgctgttcacataacatattcttttccacgttaaacctttctatatcca |
263 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||| |
|
|
| T |
28180474 |
tatgtataaatatgatggttatcattcaataaaattatcccttttatgctgttcacataacatatt-ttttccatgttaaacctttctatatcca |
28180567 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 82; Significance: 3e-38; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 82; E-Value: 3e-38
Query Start/End: Original strand, 169 - 266
Target Start/End: Complemental strand, 6677801 - 6677705
Alignment:
| Q |
169 |
tatgtataaatatgatggttatcattcaataaaaatatcccttttatgctgttcacataacatattcttttccacgttaaacctttctatatccaaca |
266 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||| |
|
|
| T |
6677801 |
tatgtataaatatgatggttatcattcaataaaaacatcccttttatgctgttcacataacatatt-ttttccactttaaacctttctatatccaaca |
6677705 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 82; E-Value: 3e-38
Query Start/End: Original strand, 1 - 106
Target Start/End: Complemental strand, 6677969 - 6677864
Alignment:
| Q |
1 |
gttgactggatgactatgaaactactgttttaagttcctaatttttaggatctattatctttttatgttattgttgagaactccatgatatgctctattt |
100 |
Q |
| |
|
||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||| |
|
|
| T |
6677969 |
gttgactggatgagtatggaactactgttttaagttcctaatttttaggatctattatctttttatgttattgttaggaactctctgatatgctctattt |
6677870 |
T |
|
| Q |
101 |
gttacc |
106 |
Q |
| |
|
|||||| |
|
|
| T |
6677869 |
gttacc |
6677864 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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