View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14336_low_12 (Length: 545)
Name: NF14336_low_12
Description: NF14336
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14336_low_12 |
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Alignment Details
Target: chr6 (Bit Score: 238; Significance: 1e-131; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 238; E-Value: 1e-131
Query Start/End: Original strand, 27 - 296
Target Start/End: Complemental strand, 4954033 - 4953764
Alignment:
| Q |
27 |
ttgatcatcatcaactaccctccaatgaattgcgaaaacctgtcaccccagatcatcttaaacttcccaaaccattcaaatatcctgaaaggtatctacc |
126 |
Q |
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| T |
4954033 |
ttgatcatcatcaactaccctccaatgaattgcgaaaacctgtcaccccagatcatctcaaactccccaaaccattcaaatatcctgaaaggtatctacc |
4953934 |
T |
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| Q |
127 |
ttgtcttttatattagattctctgtaatcacgcaattccataaagatctgatggctcatatttcgagttgtattttaaagttgattcagtgatggttaag |
226 |
Q |
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| T |
4953933 |
ttgtcttttatattagattatctgtaatcacgcaattccataaagatctgacagctcatatttcgagttgtattttaaagttgattcagtgatggttaag |
4953834 |
T |
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| Q |
227 |
actgcgtgcttgtttgaattgattttgacatgttttatgttatatggtagtttaattgattgttttggta |
296 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||| |
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| T |
4953833 |
actgtgtgcttgtttgaattgattttgacatgttttatgttatctggtagtttaattgattgtttcggta |
4953764 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 27 - 296
Target Start/End: Complemental strand, 4938324 - 4938055
Alignment:
| Q |
27 |
ttgatcatcatcaactaccctccaatgaattgcgaaaacctgtcaccccagatcatcttaaacttcccaaaccattcaaatatcctgaaaggtatctacc |
126 |
Q |
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| T |
4938324 |
ttgatcatcatcaactaccctccaatgaattgcgaaaacctgtcaccccatatcatctcaaactccccaaaccattcaaatatcttgaaaggtatctacc |
4938225 |
T |
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| Q |
127 |
ttgtcttttatattagattctctgtaatcacgcaattccataaagatctgatggctcatatttcgagttgtattttaaagttgattcagtgatggttaag |
226 |
Q |
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| T |
4938224 |
ttgtcttttatattagattctctgtaatgacgcaattccataaagatccgacggctcatatttcgagttgtattttaaagttgattcagtgatggttaag |
4938125 |
T |
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| Q |
227 |
actgcgtgcttgtttgaattgattttgacatgttttatgttatatggtagtttaattgattgttttggta |
296 |
Q |
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| T |
4938124 |
actgcgtgcttatttgaattgattttgacatgttttatgttatctggtagtttaattgattgtttcggta |
4938055 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 171; E-Value: 1e-91
Query Start/End: Original strand, 360 - 538
Target Start/End: Complemental strand, 4937991 - 4937813
Alignment:
| Q |
360 |
tcaaaagtaaatcacttttatgttgaaaccaattttaaagaatttatacattcaaaatcaatttttgtgtccatagttgggttagtgaatgaatatctat |
459 |
Q |
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| T |
4937991 |
tcaaaagtaaatcacttttatgttgaaaccaattttaaagaatttatacattcaaaatcaatttttgtgtccttagttgggttagtgaatgaatatctat |
4937892 |
T |
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| Q |
460 |
ctatcattatgtgttggctaattgttcttttttacttcattttgttaggtatacaagcccaactgatatgatgatgtcc |
538 |
Q |
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| T |
4937891 |
ctatcattatgtgttggctaattgttattttttacttcattttgttaggtatacaagcccaactgatatgatgatgtcc |
4937813 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 171; E-Value: 1e-91
Query Start/End: Original strand, 360 - 538
Target Start/End: Complemental strand, 4953700 - 4953522
Alignment:
| Q |
360 |
tcaaaagtaaatcacttttatgttgaaaccaattttaaagaatttatacattcaaaatcaatttttgtgtccatagttgggttagtgaatgaatatctat |
459 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
4953700 |
tcaaaagtaaatcacttttatgttgaaaccaattttaaagaatttatacattcaaaatcaatttttgtgtccttagttgggttagtgaatgaatatctat |
4953601 |
T |
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| Q |
460 |
ctatcattatgtgttggctaattgttcttttttacttcattttgttaggtatacaagcccaactgatatgatgatgtcc |
538 |
Q |
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| T |
4953600 |
ctatcattatgtgttggctaattgtttttttttacttcattttgttaggtatacaagcccaactgatatgatgatgtcc |
4953522 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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