View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14336_low_15 (Length: 479)

Name: NF14336_low_15
Description: NF14336
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14336_low_15
NF14336_low_15
[»] chr7 (8 HSPs)
chr7 (342-471)||(3850286-3850415)
chr7 (377-471)||(20567549-20567643)
chr7 (342-391)||(41965777-41965826)
chr7 (406-471)||(28007743-28007808)
chr7 (343-392)||(35892302-35892351)
chr7 (343-387)||(767136-767180)
chr7 (343-391)||(767966-768014)
chr7 (367-447)||(2888204-2888284)
[»] chr8 (4 HSPs)
chr8 (342-471)||(35399177-35399306)
chr8 (343-466)||(42663277-42663400)
chr8 (343-391)||(5434032-5434080)
chr8 (343-391)||(26847097-26847145)
[»] chr3 (8 HSPs)
chr3 (342-466)||(15287566-15287690)
chr3 (343-466)||(9831187-9831310)
chr3 (197-298)||(9596649-9596750)
chr3 (343-449)||(24514955-24515061)
chr3 (343-391)||(14746041-14746089)
chr3 (343-391)||(43453439-43453487)
chr3 (343-392)||(3584005-3584054)
chr3 (343-391)||(41419619-41419667)
[»] chr4 (4 HSPs)
chr4 (343-391)||(13924793-13924841)
chr4 (341-390)||(25725809-25725858)
chr4 (350-471)||(35606562-35606682)
chr4 (343-391)||(21281161-21281209)
[»] chr5 (4 HSPs)
chr5 (343-390)||(24565573-24565620)
chr5 (343-390)||(24606609-24606656)
chr5 (350-392)||(39466892-39466934)
chr5 (343-391)||(23253486-23253534)
[»] chr2 (3 HSPs)
chr2 (408-455)||(19275886-19275933)
chr2 (343-391)||(4716873-4716921)
chr2 (342-390)||(7754968-7755016)
[»] chr1 (1 HSPs)
chr1 (344-391)||(4060050-4060097)
[»] scaffold1585 (1 HSPs)
scaffold1585 (355-420)||(446-511)


Alignment Details
Target: chr7 (Bit Score: 102; Significance: 2e-50; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 342 - 471
Target Start/End: Complemental strand, 3850415 - 3850286
Alignment:
Q  342 gggtggaatctagggtgaggggccaattaaatccgtcaccggtggaccactactaagacgtgtgagattaatcaaattacacatatcatatcgtacacca 441  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||| | |||||||||||||||||||     
T  3850415 gggtggaatctagggtgaggggccaattaaatccctcaccggtggaccactactaagacgcgtgagattaatcaaatcatacatatcatatcgtacaccg 3850316  T
Q  442 tctacactggatcatatatatcttcatctc 471  Q
    |||||||||||||| |||||||||| ||||    
T  3850315 tctacactggatcacatatatcttcttctc 3850286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 377 - 471
Target Start/End: Original strand, 20567549 - 20567643
Alignment:
Q  377 tcaccggtggaccactactaagacgtgtgagattaatcaaattacacatatcatatcgtacaccatctacactggatcatatatatcttcatctc 471  Q
    ||||| ||||||||||| ||||| |||| ||||||||||||||||||| ||| | | |||||  ||||||||||||||| | |||||||| ||||    
T  20567549 tcaccagtggaccactattaagaggtgtcagattaatcaaattacacacatctttttgtacattatctacactggatcacaaatatcttcttctc 20567643  T

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Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 342 - 391
Target Start/End: Complemental strand, 41965826 - 41965777
Alignment:
Q  342 gggtggaatctagggtgaggggccaattaaatccgtcaccggtggaccac 391  Q
    ||||||| ||||||||||||| |||||||| ||| |||||||||||||||    
T  41965826 gggtggattctagggtgagggtccaattaagtccctcaccggtggaccac 41965777  T

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Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 406 - 471
Target Start/End: Complemental strand, 28007808 - 28007743
Alignment:
Q  406 agattaatcaaattacacatatcatatcgtacaccatctacactggatcatatatatcttcatctc 471  Q
    ||||||||||||||||||| ||| ||| ||| |  ||||||||||||||| | |||||||| ||||    
T  28007808 agattaatcaaattacacacatcttattgtatattatctacactggatcacaaatatcttcttctc 28007743  T

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Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 343 - 392
Target Start/End: Complemental strand, 35892351 - 35892302
Alignment:
Q  343 ggtggaatctagggtgaggggccaattaaatccgtcaccggtggaccact 392  Q
    |||||| |||||||||||||  ||||||||||| ||||||||| ||||||    
T  35892351 ggtggattctagggtgagggagcaattaaatccctcaccggtgtaccact 35892302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 343 - 387
Target Start/End: Original strand, 767136 - 767180
Alignment:
Q  343 ggtggaatctagggtgaggggccaattaaatccgtcaccggtgga 387  Q
    |||||| ||||||||||||| |||||||| ||| |||||||||||    
T  767136 ggtggattctagggtgagggtccaattaagtccctcaccggtgga 767180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 343 - 391
Target Start/End: Complemental strand, 768014 - 767966
Alignment:
Q  343 ggtggaatctagggtgaggggccaattaaatccgtcaccggtggaccac 391  Q
    |||||| | ||||||||||| |||||||| ||| |||||||||||||||    
T  768014 ggtggattttagggtgagggtccaattaagtccctcaccggtggaccac 767966  T

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Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 367 - 447
Target Start/End: Original strand, 2888204 - 2888284
Alignment:
Q  367 attaaatccgtcaccggtggaccactactaagacgtgtgagattaatcaaattacacatatcatatcgtacaccatctaca 447  Q
    ||||| ||| ||||||||||||||||| |||||   || ||||||||||||||| ||| ||| ||| |||||  |||||||    
T  2888204 attaagtccttcaccggtggaccactattaagagacgtcagattaatcaaattatacacatcttattgtacattatctaca 2888284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 86; Significance: 6e-41; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 342 - 471
Target Start/End: Original strand, 35399177 - 35399306
Alignment:
Q  342 gggtggaatctagggtgaggggccaattaaatccgtcaccggtggaccactactaagacgtgtgagattaatcaaattacacatatcatatcgtacacca 441  Q
    |||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||   |||||||||||||||||| ||||||||| |||||||||     
T  35399177 gggtggaatctagggtgaggggccaattaaatccctcaccggtggacgactactaagagacgtgagattaatcaaattagacatatcatgtcgtacaccg 35399276  T
Q  442 tctacactggatcatatatatcttcatctc 471  Q
    |||||||| ||||| |||||||||| ||||    
T  35399277 tctacactagatcacatatatcttcttctc 35399306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 343 - 466
Target Start/End: Original strand, 42663277 - 42663400
Alignment:
Q  343 ggtggaatctagggtgaggggccaattaaatccgtcaccggtggaccactactaagacgtgtgagattaatcaaattacacatatcatatcgtacaccat 442  Q
    |||||| ||||||||||| | |||||||| ||  ||||||||||| ||||| ||| | | || ||||||||||||||||||| ||| | | ||||| |||    
T  42663277 ggtggattctagggtgagagtccaattaagtctctcaccggtggatcactattaaaaggcgtcagattaatcaaattacacacatcttgttgtacatcat 42663376  T
Q  443 ctacactggatcatatatatcttc 466  Q
    ||||||||||| | | ||||||||    
T  42663377 ctacactggataacaaatatcttc 42663400  T

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Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 343 - 391
Target Start/End: Original strand, 5434032 - 5434080
Alignment:
Q  343 ggtggaatctagggtgaggggccaattaaatccgtcaccggtggaccac 391  Q
    |||||| ||||||||||||| |||||||| ||| |||||||||||||||    
T  5434032 ggtggattctagggtgagggtccaattaagtccttcaccggtggaccac 5434080  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 343 - 391
Target Start/End: Original strand, 26847097 - 26847145
Alignment:
Q  343 ggtggaatctagggtgaggggccaattaaatccgtcaccggtggaccac 391  Q
    |||||| ||||||||||||| |||||||| ||| ||||||||| |||||    
T  26847097 ggtggattctagggtgagggtccaattaagtccctcaccggtgaaccac 26847145  T

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Target: chr3 (Bit Score: 65; Significance: 2e-28; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 342 - 466
Target Start/End: Original strand, 15287566 - 15287690
Alignment:
Q  342 gggtggaatctagggtgaggggccaattaaatccgtcaccggtggaccactactaagacgtgtgagattaatcaaattacacatatcatatcgtacacca 441  Q
    ||||||| ||||||||||||| |||||||| ||| ||||||||||||||||| ||||| | || ||||||||||||||||||| ||| | | ||||||||    
T  15287566 gggtggattctagggtgagggtccaattaagtccctcaccggtggaccactattaagaggcgtcagattaatcaaattacacacatcttgttgtacacca 15287665  T
Q  442 tctacactggatcatatatatcttc 466  Q
    |||||||| ||||| | ||||||||    
T  15287666 tctacactagatcacaaatatcttc 15287690  T

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Target: chr3; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 343 - 466
Target Start/End: Complemental strand, 9831310 - 9831187
Alignment:
Q  343 ggtggaatctagggtgaggggccaattaaatccgtcaccggtggaccactactaagacgtgtgagattaatcaaattacacatatcatatcgtacaccat 442  Q
    |||||| ||| ||||||||| |||||||| ||| |||| |||||||||||| ||||| | || ||||||||||||||||||| ||| | | |||||||||    
T  9831310 ggtggattctggggtgagggtccaattaagtccctcactggtggaccactattaagaggcgtcagattaatcaaattacacacatcttgttgtacaccat 9831211  T
Q  443 ctacactggatcatatatatcttc 466  Q
    |||||||  |||| | ||||||||    
T  9831210 ctacactatatcacaaatatcttc 9831187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 197 - 298
Target Start/End: Original strand, 9596649 - 9596750
Alignment:
Q  197 gtaacatcccacttatcagttaatgatattttatcagttggttttgtttaagtacgttttaagaagaagggtatttcgctaacttagtcacaaaggctat 296  Q
    |||| |||||||||||||||||  |||||||| ||||||||||  ||||||||||||||||||| |||||||| |||| |||||| | ||||| || |||    
T  9596649 gtaatatcccacttatcagttagcgatattttttcagttggttcagtttaagtacgttttaagatgaagggtaattcgataacttggccacaaggggtat 9596748  T
Q  297 tt 298  Q
    ||    
T  9596749 tt 9596750  T

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Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 343 - 449
Target Start/End: Complemental strand, 24515061 - 24514955
Alignment:
Q  343 ggtggaatctagggtgaggggccaattaaatccgtcaccggtggaccactactaagacgtgtgagattaatcaaattacacatatcatatcgtacaccat 442  Q
    |||||| |||||||||||||    ||||| ||| ||||||||||||||||| |||||   || |||||||||| |||||||| ||| ||| ||||| |||    
T  24515061 ggtggattctagggtgagggagttattaagtccctcaccggtggaccactattaagagacgtcagattaatcagattacacacatcttattgtacatcat 24514962  T
Q  443 ctacact 449  Q
    |||||||    
T  24514961 ctacact 24514955  T

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Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 343 - 391
Target Start/End: Original strand, 14746041 - 14746089
Alignment:
Q  343 ggtggaatctagggtgaggggccaattaaatccgtcaccggtggaccac 391  Q
    |||||| ||||||||||||| |||||||||||| || ||||||||||||    
T  14746041 ggtggattctagggtgagggtccaattaaatccctccccggtggaccac 14746089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 343 - 391
Target Start/End: Original strand, 43453439 - 43453487
Alignment:
Q  343 ggtggaatctagggtgaggggccaattaaatccgtcaccggtggaccac 391  Q
    |||||| ||||||||||||| |||||||||||| |||||| ||||||||    
T  43453439 ggtggattctagggtgagggtccaattaaatccctcaccgctggaccac 43453487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 343 - 392
Target Start/End: Original strand, 3584005 - 3584054
Alignment:
Q  343 ggtggaatctagggtgaggggccaattaaatccgtcaccggtggaccact 392  Q
    |||||| |||||||||||||  ||||||||||| ||||||||| ||||||    
T  3584005 ggtggattctagggtgagggagcaattaaatccctcaccggtgtaccact 3584054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 343 - 391
Target Start/End: Complemental strand, 41419667 - 41419619
Alignment:
Q  343 ggtggaatctagggtgaggggccaattaaatccgtcaccggtggaccac 391  Q
    |||||| ||||| |||||||||||||||  ||| |||||||||||||||    
T  41419667 ggtggattctagtgtgaggggccaattaggtccctcaccggtggaccac 41419619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 33; Significance: 0.000000003; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 343 - 391
Target Start/End: Original strand, 13924793 - 13924841
Alignment:
Q  343 ggtggaatctagggtgaggggccaattaaatccgtcaccggtggaccac 391  Q
    |||||| |||||||||||||  ||||||||||| |||||||||||||||    
T  13924793 ggtggattctagggtgagggctcaattaaatccctcaccggtggaccac 13924841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 341 - 390
Target Start/End: Complemental strand, 25725858 - 25725809
Alignment:
Q  341 agggtggaatctagggtgaggggccaattaaatccgtcaccggtggacca 390  Q
    |||||||| |||||||||||||  ||||||| ||| ||||||||||||||    
T  25725858 agggtggagtctagggtgagggagcaattaagtccctcaccggtggacca 25725809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 350 - 471
Target Start/End: Complemental strand, 35606682 - 35606562
Alignment:
Q  350 tctagggtgaggggccaattaaatccgtcaccggtggaccactactaagacgtgtgagattaatcaaattacacatatcatatcgtacaccatctacact 449  Q
    |||||||||||||  | | ||| ||| ||| ||||||||||| | ||||| | |  ||||||||||| | ||||| ||||||| |||||  |||||||||    
T  35606682 tctagggtgagggagctactaagtccctcatcggtggaccaccattaagaggcgccagattaatcaagt-acacacatcatattgtacattatctacact 35606584  T
Q  450 ggatcatatatatcttcatctc 471  Q
    |||||| | |||||||| ||||    
T  35606583 ggatcacaaatatcttcttctc 35606562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 343 - 391
Target Start/End: Complemental strand, 21281209 - 21281161
Alignment:
Q  343 ggtggaatctagggtgaggggccaattaaatccgtcaccggtggaccac 391  Q
    |||||| ||||||||||||| ||||||| |||| ||| |||||||||||    
T  21281209 ggtggattctagggtgagggtccaattagatccctcatcggtggaccac 21281161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 32; Significance: 0.00000001; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 343 - 390
Target Start/End: Original strand, 24565573 - 24565620
Alignment:
Q  343 ggtggaatctagggtgaggggccaattaaatccgtcaccggtggacca 390  Q
    |||||| |||||||||||||  ||||||||||| ||||||||||||||    
T  24565573 ggtggattctagggtgagggttcaattaaatccctcaccggtggacca 24565620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 343 - 390
Target Start/End: Original strand, 24606609 - 24606656
Alignment:
Q  343 ggtggaatctagggtgaggggccaattaaatccgtcaccggtggacca 390  Q
    |||||| |||||||||||||  ||||||||||| ||||||||||||||    
T  24606609 ggtggattctagggtgagggttcaattaaatccctcaccggtggacca 24606656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 350 - 392
Target Start/End: Original strand, 39466892 - 39466934
Alignment:
Q  350 tctagggtgaggggccaattaaatccgtcaccggtggaccact 392  Q
    ||||||||||||| |||||||| ||| ||||||||||||||||    
T  39466892 tctagggtgagggtccaattaagtccctcaccggtggaccact 39466934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 343 - 391
Target Start/End: Complemental strand, 23253534 - 23253486
Alignment:
Q  343 ggtggaatctagggtgaggggccaattaaatccgtcaccggtggaccac 391  Q
    |||||| ||||||||||||| |||||||| ||| ||||||||| |||||    
T  23253534 ggtggattctagggtgagggtccaattaagtccctcaccggtgaaccac 23253486  T

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Target: chr2 (Bit Score: 32; Significance: 0.00000001; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 408 - 455
Target Start/End: Complemental strand, 19275933 - 19275886
Alignment:
Q  408 attaatcaaattacacatatcatatcgtacaccatctacactggatca 455  Q
    ||||||||||||||||||||| ||| |||||  |||||||||||||||    
T  19275933 attaatcaaattacacatatcttattgtacattatctacactggatca 19275886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 343 - 391
Target Start/End: Complemental strand, 4716921 - 4716873
Alignment:
Q  343 ggtggaatctagggtgaggggccaattaaatccgtcaccggtggaccac 391  Q
    |||||| ||||||||||||| |||||||||| | |||| ||||||||||    
T  4716921 ggtggattctagggtgagggtccaattaaattcttcactggtggaccac 4716873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 342 - 390
Target Start/End: Complemental strand, 7755016 - 7754968
Alignment:
Q  342 gggtggaatctagggtgaggggccaattaaatccgtcaccggtggacca 390  Q
    ||||||| |||||||||||||  ||||||| ||| ||||||||||||||    
T  7755016 gggtggattctagggtgagggatcaattaagtccttcaccggtggacca 7754968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 344 - 391
Target Start/End: Complemental strand, 4060097 - 4060050
Alignment:
Q  344 gtggaatctagggtgaggggccaattaaatccgtcaccggtggaccac 391  Q
    ||||| |||||| ||||||  |||||||||||||||||||||||||||    
T  4060097 gtggattctaggatgagggctcaattaaatccgtcaccggtggaccac 4060050  T

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Target: scaffold1585 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold1585
Description:

Target: scaffold1585; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 355 - 420
Target Start/End: Complemental strand, 511 - 446
Alignment:
Q  355 ggtgaggggccaattaaatccgtcaccggtggaccactactaagacgtgtgagattaatcaaatta 420  Q
    |||||| | |||||||| ||| ||||||||||||||||| ||||| || | | |||||||||||||    
T  511 ggtgagagtccaattaagtccatcaccggtggaccactattaagaggtatcaaattaatcaaatta 446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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