View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14336_low_17 (Length: 450)
Name: NF14336_low_17
Description: NF14336
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14336_low_17 |
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Alignment Details
Target: chr2 (Bit Score: 397; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 397; E-Value: 0
Query Start/End: Original strand, 8 - 431
Target Start/End: Complemental strand, 44693353 - 44692929
Alignment:
| Q |
8 |
cagcacagaacatccagcaccactgagacggaatcaaccccgaaaaccagacaaccagcgaaggaaaaccagacagaaaacgataccttcagcagacaaa |
107 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44693353 |
cagcacagaacatccagcaccactgagacggaatcaaccccgaaaaccagacaactagcgaaggaaaaccagacagaaaacgataccttcagcagacaaa |
44693254 |
T |
|
| Q |
108 |
ccaaacagcacaaaaacaactatctcaatagacacaacttcggattccaacttcactcataataaaggcaggccggtatattaaggcgggataggcacca |
207 |
Q |
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| T |
44693253 |
ccaaacagcacaaaaacaactatctcaatagacacaacttcggattccaacttcactcataataaaggcaggccggtatcttaaggctggataggcacca |
44693154 |
T |
|
| Q |
208 |
cctccacgataaaactttaacct-ctcaatgatttccaacacttccttcaccttgtcattaaatatcttatcatttctcgctttccaaatcacccaaatt |
306 |
Q |
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||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44693153 |
cctccacgataaaactttaacctcctcaacgatttccaacacttccttcaccttgtcattaaatatcttatcatttctcgctttccaaatcacccaaatt |
44693054 |
T |
|
| Q |
307 |
gtcgcgtgccaaatgagtctaaatcccttaatcatcttcttattagaggctcccgcattccaacagaaccaatgattaaaaacactttgcggcattataa |
406 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
44693053 |
gtcgcgtgccaaatgagtctaaatcccttaatcatcttcttattagaggctcccgcattccaacagagccaatgattaaaaacactttgcggcattataa |
44692954 |
T |
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| Q |
407 |
acatactatcaacccacttgagaag |
431 |
Q |
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| T |
44692953 |
acatactatcaacccacttgagaag |
44692929 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 90; Significance: 2e-43; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 240 - 425
Target Start/End: Original strand, 34866072 - 34866257
Alignment:
| Q |
240 |
ttccaacacttccttcaccttgtcattaaatatcttatcatttctcgctttccaaatcacccaaattgtcgcgtgccaaatgagtctaaatcccttaatc |
339 |
Q |
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||||| ||| || ||| ||||||| ||||| ||||||||||| ||| |||||||| |||||||||| || ||||||||||||||||| ||||||||| |
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| T |
34866072 |
ttccatcacctctttctccttgtcgttaaaaatcttatcattcctcatcttccaaataacccaaattgcggcatgccaaatgagtctaaaacccttaatc |
34866171 |
T |
|
| Q |
340 |
atcttcttattagaggctcccgcattccaacagaaccaatgattaaaaacactttgcggcattataaacatactatcaacccactt |
425 |
Q |
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| T |
34866172 |
aatttcttattagaggcacccgcattccaacacaaccaatgattaaaaacattttgaggcatcaaaaacatattatcaacccactt |
34866257 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 255 - 319
Target Start/End: Original strand, 28890608 - 28890672
Alignment:
| Q |
255 |
caccttgtcattaaatatcttatcatttctcgctttccaaatcacccaaattgtcgcgtgccaaa |
319 |
Q |
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||||||||||||||| || | | ||||||| |||||||| |||||||||||| |||||||||| |
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| T |
28890608 |
caccttgtcattaaaaatttgaccatttctatatttccaaagcacccaaattgttgcgtgccaaa |
28890672 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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