View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14336_low_18 (Length: 446)
Name: NF14336_low_18
Description: NF14336
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14336_low_18 |
 | |
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Alignment Details
Target: chr3 (Bit Score: 377; Significance: 0; HSPs: 10)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 377; E-Value: 0
Query Start/End: Original strand, 9 - 429
Target Start/End: Original strand, 33608199 - 33608619
Alignment:
| Q |
9 |
tttcaggaggtgtcacaacgatggtgccgtttcttcacaaattctatccagatattctaaggaaggcggctggtgctgaagtgaatatgtcttgtgtgta |
108 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||| |||||||||||||||||||||| ||||||||| |
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|
| T |
33608199 |
tttcaggaggtgtcacaacgatggtgccgtttcttcaaaaattctttccagatattctaaggaaggcagctggtgctgaagtgaatatgtattgtgtgta |
33608298 |
T |
|
| Q |
109 |
tgatagtcacacattgacattatttatgtcttctctttatctagctggcttagtgtcatcccttgcagctagcaaagttaccgcgtggtatggtcgaaga |
208 |
Q |
| |
|
||||||||| |||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
33608299 |
tgatagtcaaacattgacattatttacgtcttctctttatctagctggattagtgtcatcccttgcagctagcaaagttaccgcgtggtatggtcgaaga |
33608398 |
T |
|
| Q |
209 |
aacgtcatcataataggtggtgctctctttattgccggtggtgctattaatggtggttcggaaaatattcccatgctcattttgggtcgtgtttttctcg |
308 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
33608399 |
aacgtcatcataataggtggtgctctctttattgccggtggtgctattaatggtggttcggaaaatattcccatgctcattttgggtcgtgtttttctcg |
33608498 |
T |
|
| Q |
309 |
ggtttggggtcggtttcactaatcaagtaagtctacggatgcaaaatacattttcatgagataattagtttttaatttgatataatatgactaaaaatta |
408 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
33608499 |
ggtttggggttggtttcactaatcaagtaagtctacggatgcaaaatacaatttcatgagataattagtttttaatttgatataatatgactaaaaatca |
33608598 |
T |
|
| Q |
409 |
ttaatattgtattgaacttta |
429 |
Q |
| |
|
||||| ||||||||||||||| |
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|
| T |
33608599 |
ttaatgttgtattgaacttta |
33608619 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 7 - 340
Target Start/End: Original strand, 33615981 - 33616314
Alignment:
| Q |
7 |
aatttcaggaggtgtcacaacgatggtgccgtttcttcacaaattctatccagatattctaaggaaggcggctggtgctgaagtgaatatgtcttgtgtg |
106 |
Q |
| |
|
||||||||||||||| |||||||||||||| ||||| || ||||||| |||||| ||||| || ||||| || |||| ||||||||||||| ||||||| |
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|
| T |
33615981 |
aatttcaggaggtgttacaacgatggtgccatttctccaaaaattctttccagacattctgagaaaggcagccagtgccgaagtgaatatgtattgtgtg |
33616080 |
T |
|
| Q |
107 |
tatgatagtcacacattgacattatttatgtcttctctttatctagctggcttagtgtcatcccttgcagctagcaaagttaccgcgtggtatggtcgaa |
206 |
Q |
| |
|
||||||||||| | ||||||| |||||| ||||||||||||||||||||| |||||||||||| |||||||||||||||| || ||| |||||||| | |
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|
| T |
33616081 |
tatgatagtcaaatattgacactatttacgtcttctctttatctagctggattagtgtcatccattgcagctagcaaagtcacggcggcttatggtcgga |
33616180 |
T |
|
| Q |
207 |
gaaacgtcatcataataggtggtgctctctttattgccggtggtgctattaatggtggttcggaaaatattcccatgctcattttgggtcgtgtttttct |
306 |
Q |
| |
|
||||||||||||||||||| ||||||||||| ||||||||||| || ||||||||||||||||||||||| |||||||||||||||||||||||| |||| |
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|
| T |
33616181 |
gaaacgtcatcataataggaggtgctctcttcattgccggtggcgccattaatggtggttcggaaaatatccccatgctcattttgggtcgtgttcttct |
33616280 |
T |
|
| Q |
307 |
cgggtttggggtcggtttcactaatcaagtaagt |
340 |
Q |
| |
|
||||||||||| ||||||||||||||||||||| |
|
|
| T |
33616281 |
tgggtttggggttggtttcactaatcaagtaagt |
33616314 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 7 - 341
Target Start/End: Original strand, 33626478 - 33626812
Alignment:
| Q |
7 |
aatttcaggaggtgtcacaacgatggtgccgtttcttcacaaattctatccagatattctaaggaaggcggctggtgctgaagtgaatatgtcttgtgtg |
106 |
Q |
| |
|
||||||||||||||||||||| ||| ||| |||||| | ||||||| ||||| |||||||| ||||| | |||| || | ||||| |||| |||||| |
|
|
| T |
33626478 |
aatttcaggaggtgtcacaactatgaagccatttcttaaaaaattcttcccagacattctaagaaaggcagttggtactaaggtgaacatgtactgtgtg |
33626577 |
T |
|
| Q |
107 |
tatgatagtcacacattgacattatttatgtcttctctttatctagctggcttagtgtcatcccttgcagctagcaaagttaccgcgtggtatggtcgaa |
206 |
Q |
| |
|
||||||||||| | |||||||||||| | ||||||||||||||||||||| || |||| || |||| ||||||||||| ||| || || |||||| | |
|
|
| T |
33626578 |
tatgatagtcaaatattgacattattcacgtcttctctttatctagctggatttatgtcgtcacttgtagctagcaaagctacaacgatgtttggtcgga |
33626677 |
T |
|
| Q |
207 |
gaaacgtcatcataataggtggtgctctctttattgccggtggtgctattaatggtggttcggaaaatattcccatgctcattttgggtcgtgtttttct |
306 |
Q |
| |
|
|||||||||||||||| |||||| | |||| |||| |||||||| ||||| || ||||| |||||||| | ||||| || |||||||||||| |||| |
|
|
| T |
33626678 |
gaaacgtcatcataatgggtggtattgtcttccttgctggtggtgcaattaacggaggttctgaaaatatctctatgcttatcttgggtcgtgttcttct |
33626777 |
T |
|
| Q |
307 |
cgggtttggggtcggtttcactaatcaagtaagtc |
341 |
Q |
| |
|
||||| |||||||||||||||||||||||||||| |
|
|
| T |
33626778 |
tgggttgggggtcggtttcactaatcaagtaagtc |
33626812 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 7 - 341
Target Start/End: Original strand, 33621357 - 33621691
Alignment:
| Q |
7 |
aatttcaggaggtgtcacaacgatggtgccgtttcttcacaaattctatccagatattctaaggaaggcggctggtgctgaagtgaatatgtcttgtgtg |
106 |
Q |
| |
|
|||||||| ||||||||| || ||| ||| |||||| | ||||| | ||| | ||||| || || || |||||| || | ||||| |||| ||||||| |
|
|
| T |
33621357 |
aatttcagaaggtgtcaccaccatgaagccatttcttaaaaaattattcccatacattcttagaaatgcagctggtactaaggtgaacatgtattgtgtg |
33621456 |
T |
|
| Q |
107 |
tatgatagtcacacattgacattatttatgtcttctctttatctagctggcttagtgtcatcccttgcagctagcaaagttaccgcgtggtatggtcgaa |
206 |
Q |
| |
|
||||||||||| | |||||||||||| | ||||| |||||||||||||| || ||||| || || | |||||||||| ||| || || |||||| | |
|
|
| T |
33621457 |
tatgatagtcaaatattgacattattcacatcttcactttatctagctggatttgtgtcgtcactcgtggctagcaaagctacgacgatgtttggtcgga |
33621556 |
T |
|
| Q |
207 |
gaaacgtcatcataataggtggtgctctctttattgccggtggtgctattaatggtggttcggaaaatattcccatgctcattttgggtcgtgtttttct |
306 |
Q |
| |
|
|||||||||||||||| |||||| | |||| |||| |||||||| ||||| || ||||| |||||||| | ||||| || || ||||||| | |||| |
|
|
| T |
33621557 |
gaaacgtcatcataattggtggtattgtcttccttgctggtggtgccattaacggaggttctgaaaatatccatatgcttatctttggtcgtgctcttct |
33621656 |
T |
|
| Q |
307 |
cgggtttggggtcggtttcactaatcaagtaagtc |
341 |
Q |
| |
|
||||| |||||||||||||||||||||||||||| |
|
|
| T |
33621657 |
tgggttgggggtcggtttcactaatcaagtaagtc |
33621691 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 10 - 186
Target Start/End: Original strand, 33587423 - 33587599
Alignment:
| Q |
10 |
ttcaggaggtgtcacaacgatggtgccgtttcttcacaaattctatccagatattctaaggaaggcggctggtgctgaagtgaatatgtcttgtgtgtat |
109 |
Q |
| |
|
|||||||||||| ||||| |||||||| ||||| | ||||||| |||||||||||||| ||||| |||||| ||||||| ||||||| ||||||||| |
|
|
| T |
33587423 |
ttcaggaggtgttacaacaatggtgccatttctcaataaattcttcccagatattctaagaaaggcagctggtactgaagtaaatatgtactgtgtgtat |
33587522 |
T |
|
| Q |
110 |
gatagtcacacattgacattatttatgtcttctctttatctagctggcttagtgtcatcccttgcagctagcaaagt |
186 |
Q |
| |
|
|| ||||| | ||||| || |||| ||| ||||| ||||||||||| ||||||||| | |||| |||||||||||| |
|
|
| T |
33587523 |
gacagtcagatgttgacgttgtttacgtcctctctgtatctagctgggttagtgtcaactcttgtagctagcaaagt |
33587599 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 10 - 186
Target Start/End: Original strand, 33594595 - 33594771
Alignment:
| Q |
10 |
ttcaggaggtgtcacaacgatggtgccgtttcttcacaaattctatccagatattctaaggaaggcggctggtgctgaagtgaatatgtcttgtgtgtat |
109 |
Q |
| |
|
|||||||||||| ||||| |||||||| ||||| | ||||||| |||||||||||||| ||||| |||||| ||||||| ||||||| ||||||||| |
|
|
| T |
33594595 |
ttcaggaggtgttacaacaatggtgccatttctcaataaattcttcccagatattctaagaaaggcagctggtactgaagtaaatatgtactgtgtgtat |
33594694 |
T |
|
| Q |
110 |
gatagtcacacattgacattatttatgtcttctctttatctagctggcttagtgtcatcccttgcagctagcaaagt |
186 |
Q |
| |
|
|| ||||| | ||||| || |||| ||| ||||| ||||||||||| ||||||||| | |||| |||||||||||| |
|
|
| T |
33594695 |
gacagtcagatgttgacgttgtttacgtcctctctgtatctagctgggttagtgtcaactcttgtagctagcaaagt |
33594771 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 10 - 186
Target Start/End: Original strand, 33601726 - 33601902
Alignment:
| Q |
10 |
ttcaggaggtgtcacaacgatggtgccgtttcttcacaaattctatccagatattctaaggaaggcggctggtgctgaagtgaatatgtcttgtgtgtat |
109 |
Q |
| |
|
|||||||||||| ||||| |||||||| ||||| | ||||||| |||||||||||||| ||||| |||||| ||||||| ||||||| ||||||||| |
|
|
| T |
33601726 |
ttcaggaggtgttacaacaatggtgccatttctcaataaattcttcccagatattctaagaaaggcagctggtactgaagtaaatatgtactgtgtgtat |
33601825 |
T |
|
| Q |
110 |
gatagtcacacattgacattatttatgtcttctctttatctagctggcttagtgtcatcccttgcagctagcaaagt |
186 |
Q |
| |
|
|| ||||| | ||||| || |||| ||| ||||| ||||||||||| ||||||||| | |||| |||||||||||| |
|
|
| T |
33601826 |
gacagtcagatgttgacgttgtttacgtcctctctgtatctagctgggttagtgtcaactcttgtagctagcaaagt |
33601902 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 224 - 338
Target Start/End: Original strand, 33587658 - 33587772
Alignment:
| Q |
224 |
ggtggtgctctctttattgccggtggtgctattaatggtggttcggaaaatattcccatgctcattttgggtcgtgtttttctcgggtttggggtcggtt |
323 |
Q |
| |
|
|||||||| ||||| |||| |||| |||||||||| | ||||| ||||||||| | |||||||| | |||||| || |||| || ||||||||||||| |
|
|
| T |
33587658 |
ggtggtgccatctttcttgctggtgctgctattaattgcggttctgaaaatattgctatgctcatccttggtcgtattcttcttggttttggggtcggtt |
33587757 |
T |
|
| Q |
324 |
tcactaatcaagtaa |
338 |
Q |
| |
|
|| ||| |||||||| |
|
|
| T |
33587758 |
tctctagtcaagtaa |
33587772 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 224 - 338
Target Start/End: Original strand, 33594830 - 33594944
Alignment:
| Q |
224 |
ggtggtgctctctttattgccggtggtgctattaatggtggttcggaaaatattcccatgctcattttgggtcgtgtttttctcgggtttggggtcggtt |
323 |
Q |
| |
|
|||||||| ||||| |||| |||| |||||||||| | ||||| ||||||||| | |||||||| | |||||| || |||| || ||||||||||||| |
|
|
| T |
33594830 |
ggtggtgccatctttcttgctggtgctgctattaattgcggttctgaaaatattgctatgctcatccttggtcgtattcttcttggttttggggtcggtt |
33594929 |
T |
|
| Q |
324 |
tcactaatcaagtaa |
338 |
Q |
| |
|
|| ||| |||||||| |
|
|
| T |
33594930 |
tctctagtcaagtaa |
33594944 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 224 - 338
Target Start/End: Original strand, 33601961 - 33602075
Alignment:
| Q |
224 |
ggtggtgctctctttattgccggtggtgctattaatggtggttcggaaaatattcccatgctcattttgggtcgtgtttttctcgggtttggggtcggtt |
323 |
Q |
| |
|
|||||||| ||||| |||| |||| |||||||||| | ||||| ||||||||| | |||||||| | |||||| || |||| || ||||||||||||| |
|
|
| T |
33601961 |
ggtggtgccatctttcttgctggtgctgctattaattgcggttctgaaaatattgctatgctcatccttggtcgtattcttcttggttttggggtcggtt |
33602060 |
T |
|
| Q |
324 |
tcactaatcaagtaa |
338 |
Q |
| |
|
|| ||| |||||||| |
|
|
| T |
33602061 |
tctctagtcaagtaa |
33602075 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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