View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14336_low_2 (Length: 766)
Name: NF14336_low_2
Description: NF14336
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14336_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 708; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 708; E-Value: 0
Query Start/End: Original strand, 17 - 756
Target Start/End: Original strand, 3701968 - 3702707
Alignment:
| Q |
17 |
agcaacaggtgatcctcttagcattgtttcaaaaaggtttggtttaggtatatcaacttgtcataaacttgttcttgaagtttgcactgctattaaaact |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
3701968 |
agcaacaggtgatcctcttagcattgtttcaaaaaggtttggtttaggtatatcaacttgtcataaacttgttcttgaagtttgcactgctattaaaact |
3702067 |
T |
|
| Q |
117 |
gttcttatgcctaagtatcttcaatggcctaatgaaacttctttgagaaaaactaaaaatgagtttgagggtatgtcaggtattccaaatgttgtagggt |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3702068 |
gttcttatgcctaagtatcttcaatggcctaatgaaacttctttgagaaaaattaagaatgagtttgagggtatgtcaggtattccaaatgttgtagggt |
3702167 |
T |
|
| Q |
217 |
ccatgtatacatcacatgttccaattatagctcctaagattagtgttgctgattattttaacaagagacatactgagaggaatcaaaagacttcatattc |
316 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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|
| T |
3702168 |
ccatgtatacatcacatgttccaatcatagctcctaagattagtgttgctgattattttaacagaagacatactgagaggaatcaaaagacttcatattc |
3702267 |
T |
|
| Q |
317 |
aataactgttcaaggagttgttgatacaaatggtgttttcactgatgtttgtattggttggcctggttcaatgcctgatgatcaagtgttagaaaaatca |
416 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
3702268 |
aataactgttcaaggtgttgttgatacaaatggtgttttcactgatgtttgtattggttggcctggttcaatgcctgatgatcaagtgttagaaaaatca |
3702367 |
T |
|
| Q |
417 |
gcactttttcaaagggctaataatggaggacttctcagaggtgtttggattgttggtagttcagggtatcctttaatggattgggttttagtaccttata |
516 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3702368 |
gcactttttcaaagggctaataatggaggacttctcagaggtgtttggattgttggtagttcagggtatcctttaatggattgggttttagtaccttata |
3702467 |
T |
|
| Q |
517 |
ctcaacaaaatcttacttggacacaacatggtttcaatgagaagattggtgagatacaaaaagttgctaaagatgcatttgctagattgaaaggtaggtg |
616 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3702468 |
ctcaacaaaatcttacttggacacaacatggtttcaatgaaaagattggtgagatacaaaaagttgctaaagatgcatttgctagattgaaaggtaggtg |
3702567 |
T |
|
| Q |
617 |
gtcttgtttgcagaaaaggactgaagtgaagcttcaagatttgcctgttgaactttgtgcttgttgtgttttgcataacatttgtgagatgaaaggcgag |
716 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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|
| T |
3702568 |
gtcttgtttgcagaaaaggactgaagtgaagcttcaagatttgcctgttgaactttgtgcttgttgtgttttgcataacatttgtgagatgaaaggtgag |
3702667 |
T |
|
| Q |
717 |
aaaatggatcctgaacttatggttgatattgttgatgatg |
756 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3702668 |
aaaatggatcctgaacttatggttgatattgttgatgatg |
3702707 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 696; E-Value: 0
Query Start/End: Original strand, 17 - 756
Target Start/End: Original strand, 3698280 - 3699019
Alignment:
| Q |
17 |
agcaacaggtgatcctcttagcattgtttcaaaaaggtttggtttaggtatatcaacttgtcataaacttgttcttgaagtttgcactgctattaaaact |
116 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
3698280 |
agcaacaggtgatcctcttagaattgtttcaaaaaggtttggtttaggtatatcaacttgtcataaacttgttcttgaagtttgcactgctattaaaact |
3698379 |
T |
|
| Q |
117 |
gttcttatgcctaagtatcttcaatggcctaatgaaacttctttgagaaaaactaaaaatgagtttgagggtatgtcaggtattccaaatgttgtagggt |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
3698380 |
gttcttatgcctaagtatcttcaatggcctaatgaaacttctttgagaaaaattaaaaatgagtttgagggtatgtcaggtattccaaatgttgtagggt |
3698479 |
T |
|
| Q |
217 |
ccatgtatacatcacatgttccaattatagctcctaagattagtgttgctgattattttaacaagagacatactgagaggaatcaaaagacttcatattc |
316 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3698480 |
ccatgtatacatcacatgttccaattatagctcctaagattagtgttgctgcttattttaacaagagacatactgagaggaatcaaaagacttcatattc |
3698579 |
T |
|
| Q |
317 |
aataactgttcaaggagttgttgatacaaatggtgttttcactgatgtttgtattggttggcctggttcaatgcctgatgatcaagtgttagaaaaatca |
416 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3698580 |
aataactgttcaaggagttgttgatacaaatggtgttttcactgatgtttgcattggttggcctggttcaatgcctgatgatcaagtgttagaaaaatca |
3698679 |
T |
|
| Q |
417 |
gcactttttcaaagggctaataatggaggacttctcagaggtgtttggattgttggtagttcagggtatcctttaatggattgggttttagtaccttata |
516 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| | |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3698680 |
gcactttttcaaagggctaataatggaggacttcttaaaggtgtttggattgttggaagttcagggtatcctttaatggattgggttttagtaccttata |
3698779 |
T |
|
| Q |
517 |
ctcaacaaaatcttacttggacacaacatggtttcaatgagaagattggtgagatacaaaaagttgctaaagatgcatttgctagattgaaaggtaggtg |
616 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3698780 |
ctcaacaaaatcttacttggacacaacatggtttcaatgagaagattggtgagatacaaaaagttgctaaagatgcatttgctagattgaaaggtaggtg |
3698879 |
T |
|
| Q |
617 |
gtcttgtttgcagaaaaggactgaagtgaagcttcaagatttgcctgttgaactttgtgcttgttgtgttttgcataacatttgtgagatgaaaggcgag |
716 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
3698880 |
gtcttgtttgcagaaaaggactgaagtgaagctacaagatttgcctgttgtacttggtgcttgttgtgttttgcataacatttgtgagatgaaaggtgag |
3698979 |
T |
|
| Q |
717 |
aaaatggatcctgaacttatggttgatattgttgatgatg |
756 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3698980 |
aaaatggatcctgaacttatggttgatattgttgatgatg |
3699019 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 67; Significance: 2e-29; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 492 - 706
Target Start/End: Original strand, 17602680 - 17602894
Alignment:
| Q |
492 |
atggattgggttttagtaccttatactcaacaaaatcttacttggacacaacatggtttcaatgagaagattggtgagatacaaaaagttgctaaagatg |
591 |
Q |
| |
|
||||||||||||||||| || |||| || |||||||| || |||||||||||||| || ||||||| |||||||| || | ||| ||| |||||||| |
|
|
| T |
17602680 |
atggattgggttttagtgccatataagcaccaaaatctgacgtggacacaacatggatttaatgagagaattggtgaaattgagaaaattggtaaagatg |
17602779 |
T |
|
| Q |
592 |
catttgctagattgaaaggtaggtggtcttgtttgcagaaaaggactgaagtgaagcttcaagatttgcctgttgaactttgtgcttgttgtgttttgca |
691 |
Q |
| |
|
| ||| ||| ||||||||||||||| |||||| |||||||||||||| | ||| | |||||||| ||||||| ||| ||||||||||||| | || |
|
|
| T |
17602780 |
cttttagtaggttgaaaggtaggtgggggtgtttgaagaaaaggactgaaattaagttgcaagatttacctgttgttcttggtgcttgttgtgtgcttca |
17602879 |
T |
|
| Q |
692 |
taacatttgtgagat |
706 |
Q |
| |
|
||| ||||||||||| |
|
|
| T |
17602880 |
taatatttgtgagat |
17602894 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 312 - 390
Target Start/End: Original strand, 17602503 - 17602581
Alignment:
| Q |
312 |
tattcaataactgttcaaggagttgttgatacaaatggtgttttcactgatgtttgtattggttggcctggttcaatgc |
390 |
Q |
| |
|
|||||| ||||||||||||| || || ||| || |||||||| |||||||| ||||| ||||||||||| ||||||| |
|
|
| T |
17602503 |
tattcagtaactgttcaaggtgtggtaaatagtaaaggtgtttttactgatgtgtgtataggttggcctggctcaatgc |
17602581 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 45; Significance: 3e-16; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 604 - 708
Target Start/End: Complemental strand, 52250869 - 52250765
Alignment:
| Q |
604 |
tgaaaggtaggtggtcttgtttgcagaaaaggactgaagtgaagcttcaagatttgcctgttgaactttgtgcttgttgtgttttgcataacatttgtga |
703 |
Q |
| |
|
||||||| |||||||||||||||||||| |||| || |||||| || | || ||||||| || ||| |||||||||||||||||||||| |||||||| |
|
|
| T |
52250869 |
tgaaaggaaggtggtcttgtttgcagaagaggatagaggtgaagattgaggagttgcctggtgttcttggtgcttgttgtgttttgcataatatttgtga |
52250770 |
T |
|
| Q |
704 |
gatga |
708 |
Q |
| |
|
|||| |
|
|
| T |
52250769 |
aatga |
52250765 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 580 - 708
Target Start/End: Complemental strand, 52262535 - 52262407
Alignment:
| Q |
580 |
ttgctaaagatgcatttgctagattgaaaggtaggtggtcttgtttgcagaaaaggactgaagtgaagcttcaagatttgcctgttgaactttg-tgctt |
678 |
Q |
| |
|
||||||||||||||||||| || ||||||| |||||||| |||||||| || ||||| || ||||| || | ||||||||| || || | ||||| |
|
|
| T |
52262535 |
ttgctaaagatgcatttgcaaggctgaaagggaggtggtcctgtttgcaaaagaggacagaggtgaaaattgaggatttgcctaa-gattttaggtgctt |
52262437 |
T |
|
| Q |
679 |
gttgtgttttgcataacatttgtgagatga |
708 |
Q |
| |
|
|||||||||||||||| ||||||||||||| |
|
|
| T |
52262436 |
gttgtgttttgcataatatttgtgagatga |
52262407 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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