View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14336_low_21 (Length: 425)
Name: NF14336_low_21
Description: NF14336
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14336_low_21 |
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Alignment Details
Target: chr1 (Bit Score: 275; Significance: 1e-154; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 13 - 407
Target Start/End: Complemental strand, 42270244 - 42269870
Alignment:
| Q |
13 |
attattctataagttgatgggccagcatgggtttggcttaagtttgctactacggtgtttagggctgctagttttactttataataaccaagcatgttaa |
112 |
Q |
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| T |
42270244 |
attattatataagttgatgggccagcatgggtttggcttaagtttgctactacggtgtttagggctgctagttttactttataataaccaaccatgttaa |
42270145 |
T |
|
| Q |
113 |
attttcactactttttagacaaataaaaatgtactatgtatacttcctcatattctttcttcatttacttttagtacttttggatnnnnnnnnngagtac |
212 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
42270144 |
attttcactactttttagacaaataaaaatgtactatgtatacttcctcatattctttcttcatttacttttagtacttttggataaaaaaaaagagtac |
42270045 |
T |
|
| Q |
213 |
acaatcagtacatcaaatatggtagtcgtgcatgagcatttgatatgcagtgtccgagttcttaacatttagttggtgtgttctcttctaggtgtagata |
312 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||| |
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| T |
42270044 |
acaatcagtacatcaaatatggtagtcgtgtatgagcatttgatatgcagtgtccgagttcttaacatttagttggtgtgttctcttttaggtgtatata |
42269945 |
T |
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| Q |
313 |
ggaggagagctaggttaggctttttgttggtcgggcatgcgactgtgtggtatatttgaaaagtccgtaatgacctttctcaagaagtaacttcg |
407 |
Q |
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|||||||||||| |||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
42269944 |
ggaggagagcta--------------------gggcatgcgaatgtgtggtatatttgaaaagttcgtaatgacctttctcaagaagtaacttcg |
42269870 |
T |
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