View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14336_low_22 (Length: 424)
Name: NF14336_low_22
Description: NF14336
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14336_low_22 |
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Alignment Details
Target: chr2 (Bit Score: 347; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 347; E-Value: 0
Query Start/End: Original strand, 1 - 418
Target Start/End: Original strand, 955484 - 955898
Alignment:
| Q |
1 |
tctcttagaagacaagaccaaaacaacacaacaccacaatggggaacagaacatgaagatgaccaaaatcaaaatccacaagcatggattacactaagat |
100 |
Q |
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| T |
955484 |
tctcttagaagacaagaccaaaacaacacaacaccacaatggggaacagaacatgaagatgatcaaaatcaaaatccacaagcatggattacactaagat |
955583 |
T |
|
| Q |
101 |
ttgtacgaccaactcgtccaacaaggcctattgnnnnnnnnnnnnnnnnnnaaaacatggctcctcaactcaatgacattgaaaccccgtcattagacga |
200 |
Q |
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| T |
955584 |
ttgtacgaccaactcgtccaacaaggcctattgcaccaccaccaccac---aaaacatggctcctcaactcaatgacattgaaaccccgtcattagacga |
955680 |
T |
|
| Q |
201 |
gttctttgatggtgtgattcacaacaacattagaccggggccgcctccagcgtcaccttcggccattgaagccttgccaatggttaaggtaacagaaaca |
300 |
Q |
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| T |
955681 |
gttctttgatggtgtgattcacaacaacattagaccggggccgcctccagcgtcaccttcggccattgaagccttgccaatggttaaggtaacagaaaca |
955780 |
T |
|
| Q |
301 |
catttagcaagtgatccgaattgtccaatatgcaaagatgagtttgaggttgatgtggaagtgagagagttaccatgcaaacatttctaccattctgact |
400 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
955781 |
catttagcaagtgatccgaattgtccaatatgcaaagatgagtttgaggttgatgtgcaagtgagagagttaccatgcaaacatttctaccattctgact |
955880 |
T |
|
| Q |
401 |
gcattctccctttgcttc |
418 |
Q |
| |
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|||||||||||| ||||| |
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| T |
955881 |
gcattctcccttggcttc |
955898 |
T |
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