View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14336_low_24 (Length: 406)
Name: NF14336_low_24
Description: NF14336
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14336_low_24 |
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Alignment Details
Target: chr7 (Bit Score: 265; Significance: 1e-148; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 13 - 367
Target Start/End: Complemental strand, 43129407 - 43129043
Alignment:
| Q |
13 |
caaaggcaacaacaaaaatgctgtccatgaaggctcaacgaaggctcagnnnnnnnnnnnnnnnnngggctcaaaagggaagaatggtggctcagtgaag |
112 |
Q |
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| T |
43129407 |
caaagacaacaacaaaaatgctgtccatgaaggctcaacgaaggctcagaaaagaaaaaagaaaaagggctcaaaagggaagaatggtggctcagtgaag |
43129308 |
T |
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| Q |
113 |
gtgaagaaggaggaggaatgctacgatccttcactgccagctgggataaatttacccatggagtggacttactaagccaacaattctaagggctccattt |
212 |
Q |
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| T |
43129307 |
gtgaagaaggaggaggaatgctacgatccttcactgccagctgggataaatttacccatggagtggacttactaagccaacaattctaa-ggctccattt |
43129209 |
T |
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| Q |
213 |
tgaaggcaatgaaagtgagaataatctataagctcaaataatgttttaagaattatcaaataaatattgaaagacattggaactatacttatgccctgct |
312 |
Q |
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| T |
43129208 |
tgaaggcaatgaaagtgagaataatctataagctcaaataatgttttaagaattatcaaataaatattgaaagacattggaactatacttatgccctgct |
43129109 |
T |
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| Q |
313 |
attggtt-----------atttcttctattctatttttacttcatgccattattattagtcttatt |
367 |
Q |
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| T |
43129108 |
attggttatttcttggtgatttcttctattctatttttacttcatgccattattattagtcttatt |
43129043 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 82 - 194
Target Start/End: Complemental strand, 43139595 - 43139484
Alignment:
| Q |
82 |
ctcaaaagggaagaatggtggctcagtgaaggtgaagaaggaggaggaatgctacgatccttcactgccagctgggataaatttacccatggagtggact |
181 |
Q |
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| T |
43139595 |
ctcaaaagggaagaatggtgactcagagaaggtgaa-aagaaggaggaatgtcatgatcattctctgcctcctggaatagttttacccacggagtggact |
43139497 |
T |
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| Q |
182 |
tactaagccaaca |
194 |
Q |
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| T |
43139496 |
tactaatccaaca |
43139484 |
T |
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