View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14336_low_25 (Length: 378)
Name: NF14336_low_25
Description: NF14336
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14336_low_25 |
 | |
|
| [»] scaffold0042 (1 HSPs) |
| | |
|
| [»] scaffold0502 (1 HSPs) |
| | |
|
Alignment Details
Target: chr7 (Bit Score: 336; Significance: 0; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 18 - 368
Target Start/End: Original strand, 47282053 - 47282404
Alignment:
| Q |
18 |
aaatgtgcactctcaaaaacacttgtttattactatccacttgcgggaagaattagggagggagctagggacaaattgatggtggattgtactggtggtg |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47282053 |
aaatgtgcactctcaaaaacacttgtttattactatccacttgcgggaagaattagggagggagctagggacaaattgatggtggattgtactggtggtg |
47282152 |
T |
|
| Q |
118 |
aaggtgtcatgttcattgaagctgaagctgatgtaacacttaatgaatttggtgatgctcttcatcccccattcccttgtttccaagaactcatatatga |
217 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
47282153 |
aaggtgtcatgttcattgaagctgaagctgatgtaacacttaatgaatttggtgatgctcttcatcccccattcccttgcttccaagaactcatatatga |
47282252 |
T |
|
| Q |
218 |
tgttccaagcacgaaacaaatcattgatcatcctattctgctcatacaggtccaatcatgttaattcttcatccttaatgttttgcaggcctcgccacag |
317 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47282253 |
tgttccaagcacgaaacaaatcattgatcatcctattctgctcatacaggtccaatcatgttaattcttcatccttaatgttttgcaggcctcgccacac |
47282352 |
T |
|
| Q |
318 |
ttttgacttaatcacca-ttttgtccttaaagttgtgactcagacagtatta |
368 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
47282353 |
ttttgacttaatcaccatttttgtccttaaagttgtgactcagacagtatta |
47282404 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 183; E-Value: 7e-99
Query Start/End: Original strand, 22 - 309
Target Start/End: Original strand, 47275319 - 47275604
Alignment:
| Q |
22 |
gtgcactctcaaaaacacttgtttattactatccacttgcgggaagaattagggagggagctagggacaaattgatggtggattgtactggtggtgaagg |
121 |
Q |
| |
|
||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||| | || |
|
|
| T |
47275319 |
gtgcactctcacaaacacttgtttattattatccacttgcgggaagaattagggagggagctagggacaagttgatggtggattgtaccggtg---aggg |
47275415 |
T |
|
| Q |
122 |
tgtcatgttcattgaagctgaagctgatgtaacacttaatgaatttggtgatgctcttcatcccccattcccttgtttccaagaactcatatatgatgtt |
221 |
Q |
| |
|
||||||||||||||||||||| ||||||| |||||| |||||||||||||||| || ||||||||||||||||| ||||||||||||||||| |||||| |
|
|
| T |
47275416 |
agtcatgttcattgaagctgaaactgatgttacacttgatgaatttggtgatgcactgcatcccccattcccttgcttccaagaactcatatacgatgtt |
47275515 |
T |
|
| Q |
222 |
ccaagcacgaaacaaatcattgatcatcctattctgctcatacaggtccaatcatgttaattc-ttcatccttaatgttttgcaggcct |
309 |
Q |
| |
|
||| |||| || ||||| ||||||||||| |||||||| ||||||||||||| |||||||||| |||| |||||||||||||||||||| |
|
|
| T |
47275516 |
ccaggcacaaaccaaattattgatcatcccattctgcttatacaggtccaattatgttaattctttcaaccttaatgttttgcaggcct |
47275604 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 23 - 224
Target Start/End: Complemental strand, 47296437 - 47296239
Alignment:
| Q |
23 |
tgcactctcaaaaacacttgtttattactatccacttgcgggaagaattagggagggagctagggacaaattgatggtggattgtactggtggtgaaggt |
122 |
Q |
| |
|
|||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||| || ||| |||||||||||||||||||||| ||||| |
|
|
| T |
47296437 |
tgcactctcacgaacacttgtgtattactatccacttgcgggaagaattagggagggagctgggcgcaagttgatggtggattgtactggtg---aaggt |
47296341 |
T |
|
| Q |
123 |
gtcatgttcattgaagctgaagctgatgtaacacttaatgaatttggtgatgctcttcatcccccattcccttgtttccaagaactcatatatgatgttc |
222 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| || ||||||||||||| || ||||| ||||||||||| |||||| ||||| |||||||||||| |
|
|
| T |
47296340 |
gtcatgttcattgaagctgaagctgatgtaacacttgatcaatttggtgatgccctgcatcctccattcccttgcttccaacaactcctatatgatgttc |
47296241 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 23 - 283
Target Start/End: Complemental strand, 47301029 - 47300772
Alignment:
| Q |
23 |
tgcactctcaaaaacacttgtttattactatccacttgcgggaagaattagggagggagctagggacaaattgatggtggattgtactggtggtgaaggt |
122 |
Q |
| |
|
|||||||||| || |||||||||||||||||||| |||||||||| ||||||||||||||||| ||| |||||||||||||||||||| | | ||| |
|
|
| T |
47301029 |
tgcactctcacaagcacttgtttattactatccatttgcgggaaggattagggagggagctagtcgcaagttgatggtggattgtactggcg---agggt |
47300933 |
T |
|
| Q |
123 |
gtcatgttcattgaagctgaagctgatgtaacacttaatgaatttggtgatgctcttcatcccccattcccttgtttccaagaactcatatatgatgttc |
222 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| || ||||||||||||| || ||||| ||||||||||| ||||| ||||| |||||||||||| |
|
|
| T |
47300932 |
gtcatgttcattgaagctgaagctgatgtaacacttgatcaatttggtgatgccctgcatcctccattcccttgcttccatcaactcctatatgatgttc |
47300833 |
T |
|
| Q |
223 |
caagcacgaaacaaatcattgatcatcctattctgctcatacaggtccaatcatgttaatt |
283 |
Q |
| |
|
| || || ||||||| || || | ||| |||| ||||||||||| |||| || |||||| |
|
|
| T |
47300832 |
gaggctcggaacaaattatggaccgtcccattcgactcatacaggttcaattatattaatt |
47300772 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 93 - 224
Target Start/End: Original strand, 47240826 - 47240954
Alignment:
| Q |
93 |
ttgatggtggattgtactggtggtgaaggtgtcatgttcattgaagctgaagctgatgtaacacttaatgaatttggtgatgctcttcatcccccattcc |
192 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||| ||||| ||||||| |
|
|
| T |
47240826 |
ttgatggtggattgtactggt---gaaggtgtcatgttcattgaagctgaagctgatgtaacacttgatcaatttggtgatgctctgcatcctccattcc |
47240922 |
T |
|
| Q |
193 |
cttgtttccaagaactcatatatgatgttcca |
224 |
Q |
| |
|
|||| |||||| ||||| |||| ||||||||| |
|
|
| T |
47240923 |
cttgcttccaacaactcttatacgatgttcca |
47240954 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 23 - 224
Target Start/End: Original strand, 47255708 - 47255906
Alignment:
| Q |
23 |
tgcactctcaaaaacacttgtttattactatccacttgcgggaagaattagggagggagctagggacaaattgatggtggattgtactggtggtgaaggt |
122 |
Q |
| |
|
|||||||||| |||||||||||||||||||||| ||| ||||| ||||||||||| ||| || ||| |||||||||||||| || || | | ||| |
|
|
| T |
47255708 |
tgcactctcacgaacacttgtttattactatccaggtgcaggaaggattagggagggtgctgggcgcaagttgatggtggattgcaccgggg---agggt |
47255804 |
T |
|
| Q |
123 |
gtcatgttcattgaagctgaagctgatgtaacacttaatgaatttggtgatgctcttcatcccccattcccttgtttccaagaactcatatatgatgttc |
222 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||| || |||||||||||||||| || || ||||| ||||| ||||||||| | ||| |||||||| |
|
|
| T |
47255805 |
gtcatgttcattgaagctgaagctgatataacacttgatcaatttggtgatgctctgcaacctccatttccttgcttccaagaaattctatgtgatgttc |
47255904 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 23 - 268
Target Start/End: Original strand, 47264752 - 47264994
Alignment:
| Q |
23 |
tgcactctcaaaaacacttgtttattactatccacttgcgggaagaattagggagggagctagggacaaattgatggtggattgtactggtggtgaaggt |
122 |
Q |
| |
|
|||||||||| || |||||||||||||||||||| |||| ||||| ||||||||||| ||| | ||| |||||||| ||||||||||| | | || |
|
|
| T |
47264752 |
tgcactctcacaagcacttgtttattactatccatttgcaggaaggattagggagggtgctggacgcaagttgatggtcgattgtactggcg---aggga |
47264848 |
T |
|
| Q |
123 |
gtcatgttcattgaagctgaagctgatgtaacacttaatgaatttggtgatgctcttcatcccccattcccttgtttccaagaactcatatatgatgttc |
222 |
Q |
| |
|
|| |||||| |||||||||||||||||||||| ||| ||||||| ||||| ||| | ||||||||| |||| || ||| ||||||| |||| ||||||| |
|
|
| T |
47264849 |
gttatgttcgttgaagctgaagctgatgtaacccttgatgaattcggtgacgctttgcatcccccactcccatgcttcgaagaacttctatacgatgttc |
47264948 |
T |
|
| Q |
223 |
caagcacgaaacaaatcattgatcatcctattctgctcatacaggt |
268 |
Q |
| |
|
|| | || ||| ||| ||||| | ||| |||| ||||||||||| |
|
|
| T |
47264949 |
caggatcggaactaattattgaccgtcccattcgactcatacaggt |
47264994 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 113; Significance: 4e-57; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 23 - 273
Target Start/End: Original strand, 32729421 - 32729668
Alignment:
| Q |
23 |
tgcactctcaaaaacacttgtttattactatccacttgcgggaagaattagggagggagctagggacaaattgatggtggattgtactggtggtgaaggt |
122 |
Q |
| |
|
|||||||||| ||||||||| |||||||| ||| |||||||||| ||||||||||| |||||| ||| |||||||||||||||||||||| | ||| |
|
|
| T |
32729421 |
tgcactctcacgaacacttgtgtattactacccatttgcgggaaggattagggagggtgctaggcgcaagttgatggtggattgtactggtg---agggt |
32729517 |
T |
|
| Q |
123 |
gtcatgttcattgaagctgaagctgatgtaacacttaatgaatttggtgatgctcttcatcccccattcccttgtttccaagaactcatatatgatgttc |
222 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||| || |||||||||||||||| ||||| ||||||||||| |||||| ||||| |||| ||||||| |
|
|
| T |
32729518 |
gtcgtgttcattgaagctgaagctgatgtaacacttgatcaatttggtgatgctctgcatcctccattcccttgcttccaacaactcttatacgatgttc |
32729617 |
T |
|
| Q |
223 |
caagcacgaaacaaatcattgatcatcctattctgctcatacaggtccaat |
273 |
Q |
| |
|
|| || | |||| || ||||| | ||| |||| |||||||||||||||| |
|
|
| T |
32729618 |
caggctcagaacatattattgaccgtcccattcgactcatacaggtccaat |
32729668 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 65; Significance: 2e-28; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 23 - 193
Target Start/End: Original strand, 20511758 - 20511925
Alignment:
| Q |
23 |
tgcactctcaaaaacacttgtttattactatccacttgcgggaagaattagggagggagctagggacaaattgatggtggattgtactggtggtgaaggt |
122 |
Q |
| |
|
|||||||||| || |||||| ||||||||||| |||||||||| |||||||| |||| | | | || || ||||||||||||||||||| | ||| |
|
|
| T |
20511758 |
tgcactctcacaagtacttgtgcattactatccatttgcgggaaggattagggaaggagttggacaaaagttaatggtggattgtactggtg---agggt |
20511854 |
T |
|
| Q |
123 |
gtcatgttcattgaagctgaagctgatgtaacacttaatgaatttggtgatgctcttcatcccccattccc |
193 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||| |||| |||||||| | | | |||||||||||||| |
|
|
| T |
20511855 |
gtcatgttcattgaagctgaagctaatgtaacacttgatgactttggtgacggtttgcatcccccattccc |
20511925 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 117 - 196
Target Start/End: Complemental strand, 14880118 - 14880039
Alignment:
| Q |
117 |
gaaggtgtcatgttcattgaagctgaagctgatgtaacacttaatgaatttggtgatgctcttcatcccccattcccttg |
196 |
Q |
| |
|
|||||||| |||| ||||||||||| || ||||| || ||||| || |||||||||||||||||||| ||||| ||||| |
|
|
| T |
14880118 |
gaaggtgttttgtttattgaagctgatgcagatgttactcttaaagagtttggtgatgctcttcatcctccatttccttg |
14880039 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0042 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0042
Description:
Target: scaffold0042; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 117 - 190
Target Start/End: Complemental strand, 91788 - 91715
Alignment:
| Q |
117 |
gaaggtgtcatgttcattgaagctgaagctgatgtaacacttaatgaatttggtgatgctcttcatcccccatt |
190 |
Q |
| |
|
|||||||| |||| ||||||||||| |||||||| || ||||| ||||||||||||| |||||||| ||||| |
|
|
| T |
91788 |
gaaggtgttttgtttattgaagctgatgctgatgttactcttaaacaatttggtgatgcacttcatcctccatt |
91715 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0502 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0502
Description:
Target: scaffold0502; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 116 - 158
Target Start/End: Complemental strand, 11576 - 11534
Alignment:
| Q |
116 |
tgaaggtgtcatgttcattgaagctgaagctgatgtaacactt |
158 |
Q |
| |
|
||||||| ||||||||||||||||||| || |||||||||||| |
|
|
| T |
11576 |
tgaaggtatcatgttcattgaagctgatgcagatgtaacactt |
11534 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University