View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14336_low_3 (Length: 756)
Name: NF14336_low_3
Description: NF14336
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14336_low_3 |
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Alignment Details
Target: chr8 (Bit Score: 660; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 660; E-Value: 0
Query Start/End: Original strand, 10 - 738
Target Start/End: Complemental strand, 19781622 - 19780895
Alignment:
| Q |
10 |
atcatcaaaacatgcactccttactcgaaacctgtttcgagtctccatcttagtgatgatgggtcactattgatttcaggtaaaaaatttaagtgacaat |
109 |
Q |
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| T |
19781622 |
atcatcaaaacatgcactccttactcgaaacctgtttcgagtctccatcttagtgatgatgggtcactattgatttcaggtaaaaaatttaagtaacaat |
19781523 |
T |
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| Q |
110 |
tgttaatattcttagtaggagaatgttaaacggtgctcctgaggcattggttaagcaaccaaaacaagtaannnnnnnnataaaaagtggtgtaacttct |
209 |
Q |
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| T |
19781522 |
tgttaatattcttagtaggagaatgttaaacagtgctcctggggcattggttaagcaaccaaaacaagtaattttttt-ataaaaagtggtgtaacttct |
19781424 |
T |
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| Q |
210 |
tagtattatactgagagtttgtattatccgtctattttttatttctcgtagattatcaagctaatgatatatctctcgatttcaggtaacaatgatggca |
309 |
Q |
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| T |
19781423 |
tagtattatactgagagtttgtattatccgtctattttttatttctcgtaaattatcaagctaatgatatatctctcgatttcaggtaacaatgatggca |
19781324 |
T |
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| Q |
310 |
ctattgttgtgatcccatcatttaagcttgttgatgattcctctacttgtagtgacccaatcttacacaaatggaaggcgcattctgattcagtgacagg |
409 |
Q |
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| T |
19781323 |
ctattgttgtgatcccatcatttaagcttgttgatgattcctctacttgtagtgacccaatcttacacaaatggaaggctcattctgattcagtgacatg |
19781224 |
T |
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| Q |
410 |
tttcaactctggaattggcattcatacttgtacatttgtttcttgttccatggacagcacgtgtaagttttggagtttatcgaatgggataactctaatg |
509 |
Q |
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| T |
19781223 |
tttcaactctggaatttgcattcatacttgtacatttgtttcttgttccatggactgcacgtgtaagttttggagtttatcgaatgggataactctaatg |
19781124 |
T |
|
| Q |
510 |
cgaaccgtgacatttccatgtgccatttttgggcttgttatggattcaacagagtcaggtttctatgctggtggttcagatgggtttgtttataaagggt |
609 |
Q |
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| T |
19781123 |
cgaaccgtgacatttccatgtgccatttttgggcttgttatggattcaacagagtcaggtttctatgctggtggttcagatgggtttgtttataaagggt |
19781024 |
T |
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| Q |
610 |
taatgaaagttgggaatagaaaaatgttggaaaaaggaaaagcttatgaattggttaatttgggtaacaaaacaaaaagccatgatgggtcaattatgtc |
709 |
Q |
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| T |
19781023 |
taatgaaagttgggaatagaaaaatgttagaaaaaggaaaagcgtatgaattggttaatttgggtaacaaaacaaaaagccatgatgggtcaattatgtc |
19780924 |
T |
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| Q |
710 |
tttggttttggtgaatgaagggaggaatt |
738 |
Q |
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| T |
19780923 |
tttggttttggtgaatgaagggaggaatt |
19780895 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 36; Significance: 0.00000000007; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 125 - 180
Target Start/End: Original strand, 8435025 - 8435080
Alignment:
| Q |
125 |
taggagaatgttaaacggtgctcctgaggcattggttaagcaaccaaaacaagtaa |
180 |
Q |
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| T |
8435025 |
taggagaatgttaaccagtgcccctgaggcattggttaagcatccaaaataagtaa |
8435080 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 151 - 180
Target Start/End: Original strand, 6830262 - 6830291
Alignment:
| Q |
151 |
aggcattggttaagcaaccaaaacaagtaa |
180 |
Q |
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| T |
6830262 |
aggcattggttaagcaaccaaaacaagtaa |
6830291 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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