View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14336_low_32 (Length: 335)
Name: NF14336_low_32
Description: NF14336
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14336_low_32 |
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Alignment Details
Target: chr3 (Bit Score: 143; Significance: 4e-75; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 143; E-Value: 4e-75
Query Start/End: Original strand, 1 - 143
Target Start/End: Original strand, 3433393 - 3433535
Alignment:
| Q |
1 |
catatcccaaccaattgtccacacagaatctttgttttccataatcaaagtggtagcaaaagctagaatcgtgccaaagaaacatataagtgatgtgagt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3433393 |
catatcccaaccaattgtccacacagaatctttgttttccataatcaaagtggtagcaaaagctagaatcgtgccaaagaaacatataagtgatgtgagt |
3433492 |
T |
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| Q |
101 |
gttagctgatgattcttgtatgtttctatagctttagcctgcc |
143 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3433493 |
gttagctgatgattcttgtatgtttctatagctttagcctgcc |
3433535 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 1 - 143
Target Start/End: Original strand, 3374146 - 3374288
Alignment:
| Q |
1 |
catatcccaaccaattgtccacacagaatctttgttttccataatcaaagtggtagcaaaagctagaatcgtgccaaagaaacatataagtgatgtgagt |
100 |
Q |
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|||||||||||||||||||||||||||| | |||| |||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
3374146 |
catatcccaaccaattgtccacacagaagcattgtgttccataatcaaagtggtcacaaaagatagaatcgtgccaaagaaacatataagtgatgtgagt |
3374245 |
T |
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| Q |
101 |
gttagctgatgattcttgtatgtttctatagctttagcctgcc |
143 |
Q |
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||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
3374246 |
gttagctgatgattcttgtatgtttctattgctttagcctgcc |
3374288 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 210 - 319
Target Start/End: Original strand, 3433601 - 3433710
Alignment:
| Q |
210 |
attcttgcattcacatgatcaaccaagtaagatttatgaccgatttgcagaccaatttgtgaaatgttgataaacaattagtcgctaattttagcaataa |
309 |
Q |
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||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||| |||| |||||||||||||||||||||||||||||| |
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| T |
3433601 |
attcttgcattcacatgatcaaccaagtaagatttgtgaccgatttggagaccaatttgtgaaacgttggtaaacaattagtcgctaattttagcaataa |
3433700 |
T |
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| Q |
310 |
gagttggatt |
319 |
Q |
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| |||||||| |
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| T |
3433701 |
gtgttggatt |
3433710 |
T |
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