View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14336_low_33 (Length: 333)
Name: NF14336_low_33
Description: NF14336
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14336_low_33 |
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| [»] chr4 (1 HSPs) |
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| [»] chr7 (2 HSPs) |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 286; Significance: 1e-160; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 1 - 333
Target Start/End: Complemental strand, 3322022 - 3321693
Alignment:
| Q |
1 |
cataaagtacaagttaaaattcaaatttaaataaacattgcatgtagtttctgaacacaatttagttattttcaaaatatctcctaattagatcctcaaa |
100 |
Q |
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| T |
3322022 |
cataaagtacaagttaaaattcaaatttaaataaacattgcatgtagtttcagaacacaatttagttattttcaaaatatctcct---tagatcctcaaa |
3321926 |
T |
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| Q |
101 |
tacttgnnnnnnncaccataaccttcaagccatgtttcatgtgtaggattaaagaaatacttggctttactacttgaccttcaaccacatgaatgtgata |
200 |
Q |
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| T |
3321925 |
tacttatttttttcaccataaccttcaagccatgtttcatgtgtaggattaaagaaatacttggctttactacttgaccttcaaccacatgaatatgata |
3321826 |
T |
|
| Q |
201 |
attcaacagtattgctacaataatcattttcatctcaatgaaactcatctccttacccaaacaactccttggtccagcattgaaagcaataaacttgtaa |
300 |
Q |
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| T |
3321825 |
attcaacagtattgctacaataatcattttcatctcaatgaaactcatctccttacccaaacaactccttggtccagcattgaaagcaataaacttgtaa |
3321726 |
T |
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| Q |
301 |
gaaggtacatgaattatttctcctttcttagaa |
333 |
Q |
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| T |
3321725 |
gaaggtacatgaattatttctcctttcttagaa |
3321693 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 99; Significance: 8e-49; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 99; E-Value: 8e-49
Query Start/End: Original strand, 119 - 333
Target Start/End: Original strand, 12175630 - 12175844
Alignment:
| Q |
119 |
taaccttcaagccatgtttcatgtgtaggattaaagaaatacttggctttactacttgaccttcaaccacatgaatgtgataattcaacagtattgctac |
218 |
Q |
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| T |
12175630 |
taaccttcaagccatgtttcatgtgtaaaacaacagaaagacttgggattatgggatgatcttccaccacttgaatgtgataattcaacaatattgctat |
12175729 |
T |
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| Q |
219 |
aataatcattttcatctcaatgaaactcatctccttacccaaacaactccttggtccagcattgaaagcaataaacttgtaagaaggtacatgaattatt |
318 |
Q |
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| T |
12175730 |
agcaaccattttcatctcaatgaagcttatatccttacccaaacaactccttggtccagcattgaaagcaatgaacttgtaagagggaacatgaattatc |
12175829 |
T |
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| Q |
319 |
tctcctttcttagaa |
333 |
Q |
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| T |
12175830 |
cctcctttcttagaa |
12175844 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 119 - 310
Target Start/End: Original strand, 12164105 - 12164296
Alignment:
| Q |
119 |
taaccttcaagccatgtttcatgtgtaggattaaagaaatacttggctttactacttgaccttcaaccacatgaatgtgataattcaacagtattgctac |
218 |
Q |
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| T |
12164105 |
taaccttcaagccatgtttcatgtgtaagacaacagaaagacttgggattatgggatgatcttccaccacttgaatgtgataattcaacaatattgctat |
12164204 |
T |
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| Q |
219 |
aataatcattttcatctcaatgaaactcatctccttacccaaacaactccttggtccagcattgaaagcaataaacttgtaagaaggtacat |
310 |
Q |
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| T |
12164205 |
agcaaccattttcatctcaatgaagcttatatccttacccaaacaactccttggtccagcattaaaagcaatgaacttgtaagaaggaacat |
12164296 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 84; Significance: 7e-40; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 178 - 333
Target Start/End: Original strand, 36668016 - 36668171
Alignment:
| Q |
178 |
ccttcaaccacatgaatgtgataattcaacagtattgctacaataatcattttcatctcaatgaaactcatctccttacccaaacaactccttggtccag |
277 |
Q |
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||||| ||||| ||||||||||| ||||||| |||||||| | || ||| |||| ||||||||| || || ||||||||||||| |||||||||||||| |
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| T |
36668016 |
ccttccaccacttgaatgtgatagttcaacaatattgctatagcaaccatcttcaactcaatgaagcttatatccttacccaaacgactccttggtccag |
36668115 |
T |
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| Q |
278 |
cattgaaagcaataaacttgtaagaaggtacatgaattatttctcctttcttagaa |
333 |
Q |
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||||||||||||| |||||||||||||||||||||||| | |||||||||||||| |
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| T |
36668116 |
cattgaaagcaatgaacttgtaagaaggtacatgaattgtccctcctttcttagaa |
36668171 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 253 - 311
Target Start/End: Complemental strand, 13065439 - 13065381
Alignment:
| Q |
253 |
ttacccaaacaactccttggtccagcattgaaagcaataaacttgtaagaaggtacatg |
311 |
Q |
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| T |
13065439 |
ttacccaaacaacttcttggccctgcattgaaagctatgaacttgtaagacggtacatg |
13065381 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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