View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14336_low_34 (Length: 327)
Name: NF14336_low_34
Description: NF14336
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14336_low_34 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 258; Significance: 1e-143; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 15 - 312
Target Start/End: Complemental strand, 54798359 - 54798062
Alignment:
| Q |
15 |
caaaggcaaactaatatcaaaatggaaaaatgtccttccttaagagcagcacctacaaatggtgcacccacacttattgctttgaggagggtcacatcac |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
54798359 |
caaaggcaaactaatatcaaaatggaaaaatgtctttccttaagagcagcacctacaaatggtgcacccacacttattgctttgaggagggtcacatcac |
54798260 |
T |
|
| Q |
115 |
ttttctactatcaacaaagatgaaaaagtgttacgtgtggtctacaatgttttcatgcttcaatatcgctcaannnnnnnnaataatgatcgacattgtt |
214 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||| |
|
|
| T |
54798259 |
ttttctactatcaacaaagatgaaaaagtgttacgtgtggtctacaatgttttcatgcttgaatatcgctcaattttttttaataatgatcgacattgtt |
54798160 |
T |
|
| Q |
215 |
acctctaagttgaaatttagggtcatcgatgttctagcaagatgagattgaaccataaataagaaacccacgtcaaccaagagacatagttacttttt |
312 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
54798159 |
acctctaagttgaaatttagggtcttcgatgttctagcaagatgagattgaaccataaataagaaactcacgtcaaccaagagacatagttacttttt |
54798062 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University