View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14336_low_35 (Length: 319)
Name: NF14336_low_35
Description: NF14336
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14336_low_35 |
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Alignment Details
Target: chr8 (Bit Score: 232; Significance: 1e-128; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 1 - 300
Target Start/End: Complemental strand, 37213378 - 37213062
Alignment:
| Q |
1 |
aatttgttaaaccttgaagtgttatgtgttatttctgtgaatttggtgatgattttgccttatagaaaagt-----------------tgacatttttat |
83 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
37213378 |
aatttgttaaaccttgaagtgttatgtgttatttctgtgaatttggtgatgattttgccttatagaaaagtataaattatttaaaagttgacatttttat |
37213279 |
T |
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| Q |
84 |
taaaaatattacttcaagtggaagtcatttttcatttcctgatggaccatagaattttaattgaccaatattaataactaaaaaagtaatannnnnnngt |
183 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | || |
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| T |
37213278 |
taaaaatattacttcaagtggaagtcatttttcatttcctgatggaccatagaattttaattgaccaatattaataactaaaaaagtaacatctttttgt |
37213179 |
T |
|
| Q |
184 |
tcaccacacatgaaaagtgatcttctcatttttactcccagtaggaagtaagtgttaaaggaaattttctataatatttagtttagccttgaatagaaca |
283 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37213178 |
tcaccacacatgaaaagtgatcttctcatttttactcacagtaggaagtaagtgttaaaggaaattttctataatatttagtttagccttgaatagaaca |
37213079 |
T |
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| Q |
284 |
tttttggttgtttataa |
300 |
Q |
| |
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||||||||||||||||| |
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| T |
37213078 |
tttttggttgtttataa |
37213062 |
T |
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