View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14336_low_37 (Length: 305)

Name: NF14336_low_37
Description: NF14336
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14336_low_37
NF14336_low_37
[»] chr1 (1 HSPs)
chr1 (1-295)||(42270252-42270546)


Alignment Details
Target: chr1 (Bit Score: 283; Significance: 1e-158; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 1 - 295
Target Start/End: Original strand, 42270252 - 42270546
Alignment:
Q  1 gaactttagtggaaaaactcggttgcatattttattgtctcccctataattgttataacctacaaatacttatacgtcacttaaatttgagcaatctcat 100  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42270252 gaacgttagtggaaaaactcggttgcatattttattgtctcccctataattgttataacctacaaatacttatacgtcacttaaatttgagcaatctcat 42270351  T
Q  101 ccataaattcccaccccacaaggccacaacaacgattaaagaaacaaattaagagagattatacatacatatacactcctacctaggtccattccatcaa 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||    
T  42270352 ccataaattcccaccccacaaggccacaacaacgattaaagaaacaaattaagagagattatacatacatatacactcctacttaggtccattccaccaa 42270451  T
Q  201 ttaaaggaatcacaaacaagaagagaaaaataaaatagctagagagaaatacataaagatgagtgaagaatgtggtggaaacactattgctacct 295  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42270452 ttaaaggaatcacaaacaagaagagaaaaataaaatagctagagagaaatacataaagatgagtgaagaatgtggtggaaacactattgctacct 42270546  T

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