View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14336_low_38 (Length: 295)
Name: NF14336_low_38
Description: NF14336
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14336_low_38 |
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Alignment Details
Target: chr4 (Bit Score: 272; Significance: 1e-152; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 7 - 286
Target Start/End: Complemental strand, 44014741 - 44014462
Alignment:
| Q |
7 |
cctttcttgagactgcctcaactcacaaagaaaggtatgcggagacgatatggagatatgaaggatcaaattctgatctctaaaggatcttcaacttgaa |
106 |
Q |
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| T |
44014741 |
cctttcttgagactgcctcaactcacaaagaaatgtatgcggagacgatatggagatatgaaggatcaaattatgatctctaaaggatcttcaacttgaa |
44014642 |
T |
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| Q |
107 |
gttaaagaatggtttgaaagtgattgtcagccacatgaacatcaacttatggcatctgcatggtatcatgtgattcatcaccccaaatattaccacaaaa |
206 |
Q |
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| T |
44014641 |
gttaaagaatggtttgaaagtgattgtcagccacatgaacatcaacttatggcatctgcatggtatcatgtgattcatcaccccaaatattaccacaaaa |
44014542 |
T |
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| Q |
207 |
gctccaattttgtaagctttccatggattgttggtgatattttattgtatgtcaagcatgcaaatacctccactgtccta |
286 |
Q |
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| T |
44014541 |
gctccaattttgtaagctttccatggattgttggtgatattttattgtatgtcaagcatgcaaatacctccactgtccta |
44014462 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 53 - 253
Target Start/End: Complemental strand, 44015872 - 44015670
Alignment:
| Q |
53 |
gatatggagatatgaaggatcaaattctgatctc--taaaggatcttcaacttgaagttaaagaatggtttgaaagtgattgtcagccacatgaacatca |
150 |
Q |
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| T |
44015872 |
gatatggagatatgaaggatcgaattctaatctcagtaaaggatcttcagctggaagctaaagaatggtttgaaagtgattgtcagccgcatgaatatca |
44015773 |
T |
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| Q |
151 |
acttatggcatctgcatggtatcatgtgattcatcaccccaaatattaccacaaaagctccaattttgtaagctttccatggattgttggtgatatttta |
250 |
Q |
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| T |
44015772 |
acttatggcatctgcatggtaccatgtgacctatcaccccaaatattacatcgaaagctccacttttttaagctttccatggattgtcggtgacatttta |
44015673 |
T |
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| Q |
251 |
ttg |
253 |
Q |
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| T |
44015672 |
ttg |
44015670 |
T |
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