View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14336_low_4 (Length: 687)
Name: NF14336_low_4
Description: NF14336
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14336_low_4 |
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Alignment Details
Target: chr7 (Bit Score: 229; Significance: 1e-126; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 71 - 433
Target Start/End: Complemental strand, 26990018 - 26989659
Alignment:
| Q |
71 |
tattattcctcccttcctataggacttggagtggcgtgtaggttgggatagttgaagatggttggtttgttaacttcacttaccattcaaatgctttttt |
170 |
Q |
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| T |
26990018 |
tattattcctcccttcctataggacttggagtggcgtgtaggttgggatagtggaagatggttggtttgttaacttcacttaccattc-aatgctttttt |
26989920 |
T |
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| Q |
171 |
caattttcatagagattgagaatttattcaatgtggggtggcacatgaagggcattgtgtacctcactctt--agatattgtcatgttgataaaagtatc |
268 |
Q |
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| T |
26989919 |
ccattttc--agagattgagaatttattcaatgtg-----------gaagggtattgtgtacctcactcttgaatctattgtcatattgataaaagtata |
26989833 |
T |
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| Q |
269 |
tttgaaagaaaatttaaaagaggaaagtgaatagacaactcat--------tagtctttattcttaagcaacaaa-aggtgtccatagggattaaggaag |
359 |
Q |
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| T |
26989832 |
tttgaaagaaaatttaaaagaggaaagtgaatagacaactcattactacagtagtctttattcttaagcaacaaaggggtggccatagggattaaggaag |
26989733 |
T |
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| Q |
360 |
gcacatttttcctaatcacaagtttaacttttggaaaagtttctttattatgtagcatagcactactagaattt |
433 |
Q |
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| T |
26989732 |
gcacatttttcctaatcataagtttaacttttggaaaagtttctttattatgtagcatagcactactagaattt |
26989659 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 420 - 669
Target Start/End: Complemental strand, 26989639 - 26989386
Alignment:
| Q |
420 |
cactactagaatttccacttttatattttcggtaattctaaatatgtactccatttgagaagaagaa---tgttaattaactccactatattttcttgat |
516 |
Q |
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| T |
26989639 |
cactactagaatttccacttttatattttcggtaattctaaatatgtactccatttgagaagaagaagaatgttaattaactccattatattttcttgat |
26989540 |
T |
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| Q |
517 |
gttaatgtactgtaatgttagtaactatatttatcaaactaccatttttcttcatttaatt-ttttatgggagatcttggtttatatgataacgttaatg |
615 |
Q |
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| T |
26989539 |
gttaatgtactgtaatgttagtaactatatttatcaaactaccatttttcttcatttaatttttttatgggagatcttggtttatatgataacgttaatg |
26989440 |
T |
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| Q |
616 |
gaatgatatttttagaaattagaatgctaagattttgttgatgtaatgtacaaa |
669 |
Q |
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| T |
26989439 |
gaatgatatttttagaaattagaatgctaagattttcttgatgtaatgtacaaa |
26989386 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 26990060 - 26990018
Alignment:
| Q |
1 |
attacctttattttttgagattataaggaataagaaaggaaat |
43 |
Q |
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| T |
26990060 |
attacctttattttttgagattataaagaatgagaaatgaaat |
26990018 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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