View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14336_low_40 (Length: 271)
Name: NF14336_low_40
Description: NF14336
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14336_low_40 |
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Alignment Details
Target: chr3 (Bit Score: 79; Significance: 5e-37; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 91 - 251
Target Start/End: Complemental strand, 8597775 - 8597610
Alignment:
| Q |
91 |
attaaattattctaagattacaagaatnnnnnnngtaaattaagtttaaaatctcatccttccctttctggactaaaaatatttaattaaannnnnnnat |
190 |
Q |
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| T |
8597775 |
attaaattattgtaagattacaagaataaaaaaagtaaattaagtttaaaatctcatccttccctttctggactaaaaatatttaattaaaaaaatttat |
8597676 |
T |
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| Q |
191 |
c-ctctcttc----ctttcccctccctttttgatcccttgttaaattctcagccctgtttgtacca |
251 |
Q |
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| T |
8597675 |
caatctcatctcttctttcccctcccttttcgatccctttttaaattctcagccctgtttgtacca |
8597610 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 125 - 249
Target Start/End: Original strand, 8577189 - 8577315
Alignment:
| Q |
125 |
gtaaattaagtttaaaatctcatccttccctttctggactaaa-aatattt--aattaaannnnnnnatcctctcttcctttcccctccctttttgatcc |
221 |
Q |
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| T |
8577189 |
gtaaattaagtttaaaatctcatccttcattttgtggactaaacaatatttttaattaaaaaattt-atcctctcttcctttcccctcccttttcgatcc |
8577287 |
T |
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| Q |
222 |
cttgttaaattctcagccctgtttgtac |
249 |
Q |
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| T |
8577288 |
cttgttaatttctcagccctgtttgtac |
8577315 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 9 - 77
Target Start/End: Complemental strand, 8597923 - 8597855
Alignment:
| Q |
9 |
agaagcaaaggataaagaggtaaaattaacccgaccctcaaattttttgatatatattttctcttccct |
77 |
Q |
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| T |
8597923 |
agaaccaaaggacaaagaggtaaaattaacccgaccctcaaattttttgatatatattttctcttccct |
8597855 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 9 - 74
Target Start/End: Original strand, 8577010 - 8577075
Alignment:
| Q |
9 |
agaagcaaaggataaagaggtaaaattaacccgaccctcaaattttttgatatatattttctcttc |
74 |
Q |
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| T |
8577010 |
agaatcaaaggacaaagaggtaaaattaacccgaccctcaaattttttgatatatattttctcttc |
8577075 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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