View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14336_low_41 (Length: 261)
Name: NF14336_low_41
Description: NF14336
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14336_low_41 |
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Alignment Details
Target: chr2 (Bit Score: 126; Significance: 5e-65; HSPs: 13)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 126; E-Value: 5e-65
Query Start/End: Original strand, 102 - 251
Target Start/End: Complemental strand, 28213809 - 28213660
Alignment:
| Q |
102 |
caataattcaaagtgttttgttatgccttaataaaacttggattccaaggtattgaagtatatttttgcaagctccctattcaactcttacaacttgaga |
201 |
Q |
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| T |
28213809 |
caataaatcaaagtgttctgttatgccttaataaaacttggattccaaggtattgaagtatatttttgtaagctccctattcaactcttacaattagaga |
28213710 |
T |
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| Q |
202 |
tctaggaataattctatgatatgatattgcaagtcacaactgcttctgtg |
251 |
Q |
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| T |
28213709 |
tcttggaataattctatgatatgatattgcaagtcacaactgcttctgtg |
28213660 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 81 - 251
Target Start/End: Original strand, 28222444 - 28222616
Alignment:
| Q |
81 |
tagtctagtgttgcaaggctgcaataattcaaagtgttttgttatgccttaataaaacttggattccaaggtattgaagtatatttttg--caagctccc |
178 |
Q |
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| T |
28222444 |
tagtctagtgttgcaaggctgcaataaatcaaagtgttctgttatgccttaataaaacttggattccaaggtattgaagtatatttttgtataagctccc |
28222543 |
T |
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| Q |
179 |
tattcaactcttacaacttgagatctaggaataattctatgatatgatattgcaagtcacaactgcttctgtg |
251 |
Q |
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| T |
28222544 |
tattcaactcttacaattatagatcaaggaatcattcttagatatgataatacaagtcacagctgcttctgtg |
28222616 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 109 - 251
Target Start/End: Original strand, 32311014 - 32311158
Alignment:
| Q |
109 |
tcaaagtgttttgttatgccttaataaaacttggattccaaggtattgaagtatatttttgca--agctccctattcaactcttacaacttgagatctag |
206 |
Q |
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| T |
32311014 |
tcaaagtgttctgttatgttttattaaaacttggattccaaggtattgaagtatatttttgtataagctccctattcaactcttacaattagagatcaat |
32311113 |
T |
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| Q |
207 |
gaataattctatgatatgatattgcaagtcacaactgcttctgtg |
251 |
Q |
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| T |
32311114 |
aaatgattcttagatatgatattgcaagtcacaactgcttctgtg |
32311158 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 42 - 229
Target Start/End: Complemental strand, 32813573 - 32813371
Alignment:
| Q |
42 |
acagaatttataaattttgatggtgctgtgttaaa---tgtttagtctagtgttgcaaggctgcaataatt----------caaagtgttttgttatgcc |
128 |
Q |
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| T |
32813573 |
acagaatttattgattttgatggaactgtgttaaaaactgtttactttagtgttgcaaggctgcaataaatataaacaaatcaaagtgttctgttatgtt |
32813474 |
T |
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| Q |
129 |
ttaataaaacttggattccaaggtattgaagtatatttttg--caagctccctattcaactcttacaacttgagatctaggaataattctatgatatgat |
226 |
Q |
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| T |
32813473 |
ttattaaaacttggattccaaggtattgaagtatatttttgtataagctccctattcaactcttacaattagagatcaataaatgattcttagatatgat |
32813374 |
T |
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| Q |
227 |
att |
229 |
Q |
| |
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||| |
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| T |
32813373 |
att |
32813371 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 109 - 194
Target Start/End: Complemental strand, 32563836 - 32563749
Alignment:
| Q |
109 |
tcaaagtgttttgttatgccttaataaaacttggattccaaggtattgaagtatat--ttttgcaagctccctattcaactcttacaa |
194 |
Q |
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| T |
32563836 |
tcaaagtgttctgttatgctttattaaaacttggattccaaggtattgaagtatatttttttataagctccctattcagctcttacaa |
32563749 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 17 - 79
Target Start/End: Complemental strand, 28213931 - 28213869
Alignment:
| Q |
17 |
agttttggccatgtgttaaatgttgacagaatttataaattttgatggtgctgtgttaaatgt |
79 |
Q |
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| T |
28213931 |
agttttggccatgtgttaaatgtttacagaatttatagattttgatggtactgtgttaaatgt |
28213869 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 109 - 203
Target Start/End: Complemental strand, 32792690 - 32792594
Alignment:
| Q |
109 |
tcaaagtgttttgttatgccttaataaaacttggattccaaggtattgaagtatatttttg--caagctccctattcaactcttacaacttgagatc |
203 |
Q |
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| T |
32792690 |
tcaaattgttctgttatgctttattaaaacttggattccaaggtattgaagtatatttttgtataagctccgtattgaactcttacaattagagatc |
32792594 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 17 - 105
Target Start/End: Original strand, 28222353 - 28222436
Alignment:
| Q |
17 |
agttttggccatgtgttaaatgttgacagaatttataaattttgatggtgctgtgttaaatgtttagtctagtgttgcaaggctgcaat |
105 |
Q |
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| T |
28222353 |
agttttagccatgtgttaaatgtttacagaatttatagattttgatggtactgtgttaaat-----gtctagtattgcaaggctgcaat |
28222436 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #9
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 44 - 169
Target Start/End: Complemental strand, 32799387 - 32799249
Alignment:
| Q |
44 |
agaatttataaattttgatggtgctgtgttaaa---tgtttagtctagtgttgcaaggctgcaataatt----------caaagtgttttgttatgcctt |
130 |
Q |
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|||||||||||||||| ||| |||| ||||| |||||| |||||||||||||||||||||||| | ||||||||| | ||||||||| |
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| T |
32799387 |
agaatttataaatttttgtggcactgttttaaaatatgtttactctagtgttgcaaggctgcaataaatatcaacaaatcaaagtgttcttttatgcctt |
32799288 |
T |
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| Q |
131 |
aataaaacttggattccaaggtattgaagtatatttttg |
169 |
Q |
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| T |
32799287 |
attaaaacttagattccaaggtattgaagtatatttttg |
32799249 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #10
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 115 - 164
Target Start/End: Complemental strand, 32785171 - 32785122
Alignment:
| Q |
115 |
tgttttgttatgccttaataaaacttggattccaaggtattgaagtatat |
164 |
Q |
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|||| |||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
32785171 |
tgttctgttatgccttattaaaacttggattccaaggtattgaagtatat |
32785122 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 219 - 251
Target Start/End: Complemental strand, 32790339 - 32790307
Alignment:
| Q |
219 |
gatatgatattgcaagtcacaactgcttctgtg |
251 |
Q |
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| T |
32790339 |
gatatgatattgcaagtcacaactgcttctgtg |
32790307 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 198 - 243
Target Start/End: Complemental strand, 32799243 - 32799198
Alignment:
| Q |
198 |
gagatctaggaataattctatgatatgatattgcaagtcacaactg |
243 |
Q |
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| T |
32799243 |
gagatcaaggaatgattcttagatatgatattgcaagtcacaactg |
32799198 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 135 - 167
Target Start/End: Complemental strand, 28211836 - 28211804
Alignment:
| Q |
135 |
aaacttggattccaaggtattgaagtatatttt |
167 |
Q |
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| T |
28211836 |
aaacttggattccaaggtattgaagtgtatttt |
28211804 |
T |
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