View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14336_low_44 (Length: 253)
Name: NF14336_low_44
Description: NF14336
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14336_low_44 |
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Alignment Details
Target: chr6 (Bit Score: 209; Significance: 1e-114; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 1 - 236
Target Start/End: Original strand, 32866297 - 32866533
Alignment:
| Q |
1 |
tgggacagaggggattattttgttaattaaagtgacattaatcagcatttcatagctatttttaagcgaatttcaactgaataacttaaggttacaaaac |
100 |
Q |
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| T |
32866297 |
tgggacagaggggattattttgttaattaaagtgacattaatcatcattttatagttatatttaagcgaatttcaactgaataacttaaggttacaaaac |
32866396 |
T |
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| Q |
101 |
taatcacataaaatgatgtgatgttgcctaagcacattttgattcaattataagagataaa-tatacgggaaaagcctcctaaaatttggatcaagtgta |
199 |
Q |
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| T |
32866397 |
taatcacataaaatgatgtgatgttgcctaagcacattttgattcaattataagagataaagtatacggaaaaagcctcctaaaatttggatcaagtgta |
32866496 |
T |
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| Q |
200 |
atattgatgtcgcttttgtgtctatttgtgacacaac |
236 |
Q |
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| T |
32866497 |
atattgatgtcgcttttgtgtctatttgtgacacaac |
32866533 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 75 - 232
Target Start/End: Original strand, 32874696 - 32874854
Alignment:
| Q |
75 |
aactgaataacttaaggttacaaaactaatcacataaaatgatgtgatgttgcctaagcacattttgattcaattataagagataaa-tatacgggaaaa |
173 |
Q |
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| T |
32874696 |
aactcaatatcttaaggttacaacactaagcacataaaataatgtggtgttgtgtaagctccttttgattcaattataaggtataaagtatgcagaaaaa |
32874795 |
T |
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| Q |
174 |
gcctcctaaaatttggatcaagtgtaatattgatgtcgcttttgtgtctatttgtgaca |
232 |
Q |
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| T |
32874796 |
gcctcctaaaaattgaatcaaatgtaacattgatgtcacttttatgtctatttatgaca |
32874854 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 85 - 154
Target Start/End: Original strand, 32872785 - 32872854
Alignment:
| Q |
85 |
cttaaggttacaaaactaatcacataaaatgatgtgatgttgcctaagcacattttgattcaattataag |
154 |
Q |
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| T |
32872785 |
cttaaggttacaacactaagcacataacataatgtggtgttgtgtaagatcattttgatacaattataag |
32872854 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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