View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14336_low_6 (Length: 599)

Name: NF14336_low_6
Description: NF14336
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14336_low_6
NF14336_low_6
[»] chr1 (3 HSPs)
chr1 (1-582)||(12637001-12637582)
chr1 (9-426)||(15885534-15885954)
chr1 (1-412)||(12609905-12610319)
[»] scaffold0059 (1 HSPs)
scaffold0059 (2-426)||(62154-62581)
[»] chr6 (1 HSPs)
chr6 (1-426)||(21779813-21780241)
[»] chr3 (16 HSPs)
chr3 (1-426)||(23039041-23039469)
chr3 (1-422)||(23145920-23146344)
chr3 (1-426)||(23036170-23036598)
chr3 (1-429)||(23148758-23149189)
chr3 (7-429)||(23024278-23024703)
chr3 (7-429)||(23140052-23140477)
chr3 (1-191)||(22971951-22972141)
chr3 (1-191)||(22946404-22946594)
chr3 (8-197)||(23017069-23017258)
chr3 (82-197)||(23032780-23032895)
chr3 (1-197)||(22941378-22941574)
chr3 (7-197)||(22831841-22832031)
chr3 (1-81)||(22986277-22986357)
chr3 (1-52)||(23032714-23032765)
chr3 (313-426)||(23017377-23017490)
chr3 (103-191)||(22916681-22916769)
[»] scaffold0554 (1 HSPs)
scaffold0554 (1-426)||(6326-6754)
[»] chr8 (1 HSPs)
chr8 (7-197)||(5594034-5594224)
[»] chr5 (2 HSPs)
chr5 (1-42)||(7154492-7154533)
chr5 (88-140)||(41465802-41465854)
[»] chr2 (1 HSPs)
chr2 (1-33)||(2433650-2433682)


Alignment Details
Target: chr1 (Bit Score: 550; Significance: 0; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 550; E-Value: 0
Query Start/End: Original strand, 1 - 582
Target Start/End: Original strand, 12637001 - 12637582
Alignment:
1 cttcctgcaccaaaaggaatgtactcaaaattatttcctttgtagtcaatagagctaccaatgaatctctctggatgaaacctctctggttcagtccagt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
12637001 cttcctgcaccaaaaggaatgtactcaaaattatttcctttgtagtcaatagagctaccaatgaatctctctggatgaaacctctctggttcagtccagt 12637100  T
101 actttggatctctaccaattgtccatgcatttactatcaccttacttttggctggtatatgatacccttcaatttcacatgcttgtccacattctctaag 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
12637101 actttggatctctaccaattgtccatgcatttactatcaccttacttttggctggtatatgatacccttcaatttcacatgcttgtccacattctctaag 12637200  T
201 taaaagaggagttggagggtgtaaccttagagtctctttcactactaacttcaaatattcgagttcatttatatagttttcaccaacagctcctttcttg 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
12637201 taaaagaggagttggagggtgtaaccttagagtctctttcactactaacttcaaatattcgagttcatttatatagttttcaccaacagttcctttcttg 12637300  T
301 ttgaatatttttctcacttcatattgtgctttcttcatcactcttggatcccttactaactctgccattgcccaaactatggtagtggatgatgtttcac 400  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
12637301 ttgaatatttttctcacttcatattgtgctttcttcatcactcttggatcccttactaactctgccattgcccaaactatggtagtggatgatgtttcac 12637400  T
401 ctccagcaccaatcatgtcctgaaaaatatatcaggatatcaaaaaagactactaaagtctaaaagagataatttgatagcatcaatcgcaaggttttaa 500  Q
    ||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| | ||||||||| |||||||||||    
12637401 ctccagcaccaatgatgtcctgaaaaatatatcaggatttcaaaaaagactactaaagtctaaaagagataatttgttggcatcaatcacaaggttttaa 12637500  T
501 attgtggttgcgtcgcaatctttgatattgcaataatcaagaatctgaatcgtgattatatcgtgtttgctgatacaccaaa 582  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||    
12637501 attgtggttgcgtcgcaatctttgatattgcaataatcaagaatctgaatcgtgattatatcgtgttttctaatacaccaaa 12637582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 9 - 426
Target Start/End: Complemental strand, 15885954 - 15885534
Alignment:
9 accaaaaggaatgtactcaaaattatttcctttgtagtcaatagagctaccaatgaatctctctggatgaaacctctctggttcagtccagtactttgga 108  Q
    ||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||    
15885954 accaaaaggaatgtactcaaaattattccctttatagtcaatagagctaccaatgaatctctctggataaaacctctctggttcagtccaatactttgga 15885855  T
109 tctctaccaattgtccatgcatttactatcaccttacttttggctggtatatgatacccttcaatttcacatgcttgtccacattctct---aagtaaaa 205  Q
    ||||| ||||| | ||||||||| ||||||||||| ||||||| |||||||||||| || ||||| |||||||||||| ||||||||||   ||||||||    
15885854 tctcttccaatcgcccatgcattgactatcaccttgcttttggttggtatatgataaccatcaatctcacatgcttgttcacattctcttggaagtaaaa 15885755  T
206 gaggagttggagggtgtaaccttagagtctctttcactactaacttcaaatattcgagttcatttatatagttttcaccaacagctcctttcttgttgaa 305  Q
    |||||| |||||||||||||||||  ||||||||||| ||| ||||||||||   ||| ||||| |||||||| |||||||||  ||||||  |||||||    
15885754 gaggagctggagggtgtaaccttaaggtctctttcacaactgacttcaaataagtgagctcattaatatagttctcaccaacaattccttttgtgttgaa 15885655  T
306 tatttttctcacttcatattgtgctttcttcatcactcttggatcccttactaactctgccattgcccaaactatggtagtggatgatgtttcacctcca 405  Q
     |||| ||| ||||||| ||||||||||||||||||||||  ||||||||| |||||||||||||||||||||||||| ||    ||||| || ||||||    
15885654 catttctcttacttcatcttgtgctttcttcatcactctttcatcccttaccaactctgccattgcccaaactatggtggtactcgatgtatctcctcca 15885555  T
406 gcaccaatcatgtcctgaaaa 426  Q
    ||||||| |||||||||||||    
15885554 gcaccaaacatgtcctgaaaa 15885534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 1 - 412
Target Start/End: Original strand, 12609905 - 12610319
Alignment:
1 cttcctgcaccaaaaggaatgtactcaaaattatttcctttgtagtcaatagagctaccaatgaatctctctggatgaaacctctctggttcagtccagt 100  Q
    ||||| |||||||| |||||||||||||||||||| ||||||||||||||||||||||| ||||||||||| |||| |||| ||||||||||||||||||    
12609905 cttccagcaccaaagggaatgtactcaaaattattccctttgtagtcaatagagctaccgatgaatctctccggataaaacttctctggttcagtccagt 12610004  T
101 actttggatctctaccaattgtccatgcatttactatcaccttacttttggctggtatatgatacccttcaatttcacatgcttgtccacattctct--- 197  Q
    ||||||||||||| ||||| | ||||||||| ||||||||||| ||||||  ||||||| ||||||| ||||| |||||||||||||||||||||||       
12610005 actttggatctcttccaatcgcccatgcattgactatcaccttgcttttgattggtatacgatacccatcaatctcacatgcttgtccacattctcttgg 12610104  T
198 aagtaaaagaggagttggagggtgtaaccttagagtctctttcactactaacttcaaatattcgagttcatttatatagttttcaccaacagctcctttc 297  Q
    |||||||||||||  |||||| ||||||||||  ||||||||||| ||| |||| |||||   ||||||||||||| | |||||  |||||  |||||||    
12610105 aagtaaaagaggacctggaggatgtaaccttaaggtctctttcacaactgactttaaataagtgagttcatttatacaattttcttcaacatttcctttc 12610204  T
298 ttgttgaatatttttctcacttcatattgtgctttcttcatcactcttggatcccttactaactctgccattgcccaaactatggtagtggatgatgttt 397  Q
     |||||||||| | ||| || |||| ||||||||||||||||||||||  ||||||||| ||||||| ||||||||||||||| ||||  | |||||| |    
12610205 atgttgaatatatctcttacctcatcttgtgctttcttcatcactcttttatcccttaccaactctgacattgcccaaactatagtagaagctgatgtat 12610304  T
398 cacctccagcaccaa 412  Q
    |||||||||||||||    
12610305 cacctccagcaccaa 12610319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0059 (Bit Score: 186; Significance: 1e-100; HSPs: 1)
Name: scaffold0059
Description:

Target: scaffold0059; HSP #1
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 2 - 426
Target Start/End: Original strand, 62154 - 62581
Alignment:
2 ttcctgcaccaaaaggaatgtactcaaaattatttcctttgtagtcaatagagctaccaatgaatctctctggatgaaacctctctggttcagtccagta 101  Q
    |||| |||||||||||||||||||| |||||||| || |||||||||||||| |||||||||||||||||||||| ||||||||||||||| ||||||||    
62154 ttccagcaccaaaaggaatgtactcgaaattattcccgttgtagtcaatagaactaccaatgaatctctctggataaaacctctctggttccgtccagta 62253  T
102 ctttggatctctaccaattgtccatgcatttactatcaccttacttttggctggtatatgatacccttcaatttcacatgcttgtccacattctct---a 198  Q
    | |||||||||| || |||| ||||||||| ||||||| |||  ||||   ||||||||||||||| ||||| |||||||||| || |||||||||   |    
62254 ccttggatctcttccgattgcccatgcattaactatcagctttgttttcattggtatatgatacccatcaatctcacatgcttctctacattctcttgga 62353  T
199 agtaaaagaggagttggagggtgtaaccttagagtctctttcactactaacttcaaatattcgagttcatttatatagttttcaccaacagctcctttct 298  Q
    |||||||||| |  ||| ||||||||||| || ||||||||||| | | ||||||  |||| ||||||||  ||| |  ||||| ||| |||||| |||     
62354 agtaaaagagcacctggggggtgtaacctcagggtctctttcacaattgacttcacgtatttgagttcatgcatacaactttcatcaaaagctcccttca 62453  T
299 tgttgaatatttttctcacttcatattgtgctttcttcatcactcttggatcccttactaactctgccattgcccaaactatggtagtggatgatgtttc 398  Q
    ||||| |||||| ||||||||||| ||||||||||||||||||||||||||| ||||| |||||||||||||||||||||| | |    | |||||| ||    
62454 tgttgtatatttctctcacttcatcttgtgctttcttcatcactcttggatctcttaccaactctgccattgcccaaactacgctcaaagctgatgtatc 62553  T
399 acctccagcaccaatcatgtcctgaaaa 426  Q
    |||||||||||||| |||||||||||||    
62554 acctccagcaccaaacatgtcctgaaaa 62581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 111; Significance: 1e-55; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 111; E-Value: 1e-55
Query Start/End: Original strand, 1 - 426
Target Start/End: Original strand, 21779813 - 21780241
Alignment:
1 cttcctgcaccaaaaggaatgtactcaaaattatttcctttgtagtcaatagagctaccaatgaatctctctggatgaaacctctctggttcagtccagt 100  Q
    ||||| |||||||| |||||||||||||||||| | |||||  ||||||||  |||| | |||||||||||||||| |||| ||||||||||||||||||    
21779813 cttccggcaccaaatggaatgtactcaaaattactccctttaaagtcaatatcgctatcgatgaatctctctggataaaacatctctggttcagtccagt 21779912  T
101 actttggatctctaccaattgtccatgcatttactatcaccttacttttggctggtatatgatacccttcaatttcacatgcttgtccacattctctaag 200  Q
    | |||||||||||  |||||| ||| ||||| | |||||||||| | ||    || || || || || |  || ||||||||||| | |||||||||  |    
21779913 agtttggatctcttgcaattgcccaagcattgattatcaccttagtcttaatcggaatgtggtaaccatttatatcacatgcttgactacattctctcgg 21780012  T
201 taa---aagaggagttggagggtgtaaccttagagtctctttcactactaacttcaaatattcgagttcatttatatagttttcaccaacagctcctttc 297  Q
    |||   |||||| | ||||||||||| |||||  || ||||| || ||| | |||||||| | ||||||||| ||  | |||||| ||||   |||||||    
21780013 taacaaaagaggtgctggagggtgtagccttaaggtttctttgacaactgatttcaaataattgagttcattgatgcaattttcatcaacccttcctttc 21780112  T
298 ttgttgaatatttttctcacttcatattgtgctttcttcatcactcttggatcccttactaactctgccattgcccaaactatggtagtggatgatgttt 397  Q
     | ||||| | || ||||||||||| ||||||||||||||| | ||||||||||||||| |  ||| ||||||||||| |||||||  | | |||||| |    
21780113 attttgaaaacttctctcacttcatcttgtgctttcttcattattcttggatcccttaccatttctaccattgcccaatctatggtgcttgctgatgtct 21780212  T
398 cacctccagcaccaatcatgtcctgaaaa 426  Q
    ||||||||||||||| |||||||||||||    
21780213 cacctccagcaccaaacatgtcctgaaaa 21780241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 103; Significance: 6e-51; HSPs: 16)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 103; E-Value: 6e-51
Query Start/End: Original strand, 1 - 426
Target Start/End: Original strand, 23039041 - 23039469
Alignment:
1 cttcctgcaccaaaaggaatgtactcaaaattatttcctttgtagtcaatagagctaccaatgaatctctctggatgaaacctctctggttcagtccagt 100  Q
    ||||| ||||||||||||||||||||| ||||| ||||||| |||||||| | |||  ||| |||||||||||||| ||| ||||| || ||||||||||    
23039041 cttccggcaccaaaaggaatgtactcataattacttcctttatagtcaatggcgctgtcaaggaatctctctggataaaatctctccggctcagtccagt 23039140  T
101 actttggatctctaccaattgtccatgcatttactatcaccttacttttggctggtatatgatacccttcaatttcacatgcttgtccacattctct--- 197  Q
    | |||||||||||  |||||| ||| ||||| |||||||||||||| ||    ||||| ||||| || |  || ||||||| ||| | |||||||||       
23039141 aatttggatctcttgcaattgcccaagcattgactatcaccttactcttaataggtatgtgataaccatttatctcacatgtttgacgacattctcttgg 23039240  T
198 aagtaaaagaggagttggagggtgtaaccttagagtctctttcactactaacttcaaatattcgagttcatttatatagttttcaccaacagctcctttc 297  Q
     || |||||||| ||||||||||||||||| || || ||||| || ||| |||||||||| | ||||||||| ||  | |||||| ||||   |||||||    
23039241 cagcaaaagaggtgttggagggtgtaacctcagggtttctttgacaactgacttcaaataattgagttcattgatgcaattttcatcaacccttcctttc 23039340  T
298 ttgttgaatatttttctcacttcatattgtgctttcttcatcactcttggatcccttactaactctgccattgcccaaactatggtagtggatgatgttt 397  Q
     | ||||| |  | |||||| |||| ||| ||||||||||| | ||||||||||||||  |  ||| ||||||||||  |||||||  | | |||||| |    
23039341 attttgaaaacctctctcacctcatcttgcgctttcttcattattcttggatcccttatcatttctaccattgcccagtctatggtgcttgctgatgtct 23039440  T
398 cacctccagcaccaatcatgtcctgaaaa 426  Q
    |||||||||||||||  | ||||||||||    
23039441 cacctccagcaccaaaaacgtcctgaaaa 23039469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 1 - 422
Target Start/End: Original strand, 23145920 - 23146344
Alignment:
1 cttcctgcaccaaaaggaatgtactcaaaattatttcctttgtagtcaatagagctaccaatgaatctctctggatgaaacctctctggttcagtccagt 100  Q
    ||||| ||||||||||||||||||||||| ||| | ||||| |||||||||  |||  | |||||||||||||||| |||||||||||||||||||||||    
23145920 cttccagcaccaaaaggaatgtactcaaagttactccctttatagtcaatatcgctgtcgatgaatctctctggataaaacctctctggttcagtccagt 23146019  T
101 actttggatctctaccaattgtccatgcatttactatcaccttacttttggctggtatatgatacccttcaatttcacatgcttgtccacattctctaag 200  Q
    | |||||||||||  ||| || ||| ||||| |||| ||||||| | ||    ||||| ||||| || |  || |||||| |||| | |||||||||  |    
23146020 agtttggatctcttgcaactgcccaagcattgactaacaccttagtcttaatcggtatgtgataaccatttatatcacattcttgactacattctctcgg 23146119  T
201 t---aaaagaggagttggagggtgtaaccttagagtctctttcactactaacttcaaatattcgagttcatttatatagttttcaccaacagctcctttc 297  Q
    |   |||||||| | ||||||||||| |||||  || ||||| || ||||| |||||||| | ||||||||| ||  | |||||| ||||   |||||||    
23146120 taacaaaagaggtgctggagggtgtagccttaaggtttctttgacaactaatttcaaataattgagttcattgatgcaattttcatcaacccttcctttc 23146219  T
298 ttgttgaatatttttctcacttcatattgtgctttcttcatcactcttggatcccttactaactctgccattgcccaaactatggtagtggatgatgttt 397  Q
     | ||||| |  | |||||| |||| ||||||||||||||| | |||||||||| |||| || ||| ||||||||||| |||||||  | | |||||| |    
23146220 attttgaaaacctctctcacctcatcttgtgctttcttcatgattcttggatcctttaccaattctaccattgcccaatctatggtgcttgctgatgtct 23146319  T
398 cacctccagcaccaatcatgtcctg 422  Q
    ||||||||||| |||  ||||||||    
23146320 cacctccagcagcaaaaatgtcctg 23146344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 91; E-Value: 8e-44
Query Start/End: Original strand, 1 - 426
Target Start/End: Original strand, 23036170 - 23036598
Alignment:
1 cttcctgcaccaaaaggaatgtactcaaaattatttcctttgtagtcaatagagctaccaatgaatctctctggatgaaacctctctggttcagtccagt 100  Q
    ||||| ||||||||||||||||||||||| ||| | |||||||||||||||| |||  | ||||||||||| |||| ||| |||||||||||||||||||    
23036170 cttccggcaccaaaaggaatgtactcaaagttactccctttgtagtcaatagcgctgtcgatgaatctctcgggataaaatctctctggttcagtccagt 23036269  T
101 actttggatctctaccaattgtccatgcatttactatcaccttacttttggctggtatatgatacccttcaatttcacatgcttgtccacattctct--- 197  Q
    | |||||||||||  |||||| ||| ||||||| | | |||||||| ||    ||||| ||||| || |  ||  ||||||||||  |||| |||||       
23036270 aatttggatctcttgcaattgcccaagcatttattgttaccttactcttaataggtatgtgataaccatttatcacacatgcttgaacacactctcttgg 23036369  T
198 aagtaaaagaggagttggagggtgtaaccttagagtctctttcactactaacttcaaatattcgagttcatttatatagttttcaccaacagctcctttc 297  Q
     || |||||||| ||||||||||||||||| || || ||||| || ||| | ||||||||   |||||| || ||| | || ||  | ||   |||||||    
23036370 tagcaaaagaggtgttggagggtgtaacctcagggtttctttgacgactgatttcaaataaatgagttcgttgatacaattctcttcgacccttcctttc 23036469  T
298 ttgttgaatatttttctcacttcatattgtgctttcttcatcactcttggatcccttactaactctgccattgcccaaactatggtagtggatgatgttt 397  Q
     | ||||| |  | |||||| |||  ||||||||||||||| | |||||||| |||||| |  ||||||||||||||| |||||||  | | |||||| |    
23036470 attttgaaaacctctctcacctcagcttgtgctttcttcattattcttggattccttaccatttctgccattgcccaatctatggtgcttgctgatgtct 23036569  T
398 cacctccagcaccaatcatgtcctgaaaa 426  Q
    |||||||||||||||  ||||||||||||    
23036570 cacctccagcaccaaaaatgtcctgaaaa 23036598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 1 - 429
Target Start/End: Original strand, 23148758 - 23149189
Alignment:
1 cttcctgcaccaaaaggaatgtactcaaaattatttcctttgtagtcaatagagctaccaatgaatctctctggatgaaacctctctggttcagtccagt 100  Q
    ||||| |||||||||||||||||||| || ||| | ||||| |||||||||  |||  |||||||||||||||||| |||||||||||||||||||||||    
23148758 cttccggcaccaaaaggaatgtactcgaagttactccctttatagtcaatatcgctttcaatgaatctctctggataaaacctctctggttcagtccagt 23148857  T
101 actttggatctctaccaattgtccatgcatttactatcaccttacttttggctggtatatgatacccttcaatttcacatgcttgtccacattctctaag 200  Q
    | |||| ||||||  |||||| ||| ||||| | |||||| ||| | ||    || || ||||| || |  || ||||| ||||| | |||||||||  |    
23148858 agtttgaatctcttgcaattgcccaagcattgattatcactttagtcttaatcggaatgtgataaccatttatatcacacgcttgactacattctctcgg 23148957  T
201 t---aaaagaggagttggagggtgtaaccttagagtctctttcactactaacttcaaatattcgagttcatttatatagttttcaccaacagctcctttc 297  Q
    |   |||||||| |  |||||||||| |||||  || ||||| || ||||| |||||||| | ||||||||| ||  | |||||| ||||   |||||||    
23148958 taacaaaagaggtgccggagggtgtagccttaaggtttctttgacaactaatttcaaataattgagttcattgatgcaattttcatcaacctttcctttc 23149057  T
298 ttgttgaatatttttctcacttcatattgtgctttcttcatcactcttggatcccttactaactctgccattgcccaaactatggtagtggatgatgttt 397  Q
     | ||||| |  | |||||| |||| ||||||||||||||| | |||||||||| |||| | |||| ||||||||||| |||||||  | | |||||| |    
23149058 attttgaaaacctctctcacctcatcttgtgctttcttcattattcttggatcctttaccatctctaccattgcccaatctatggtgcttgctgatgtct 23149157  T
398 cacctccagcaccaatcatgtcctgaaaaata 429  Q
    | |||||||||||||  |||||||||| ||||    
23149158 cgcctccagcaccaaaaatgtcctgaacaata 23149189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 76; E-Value: 8e-35
Query Start/End: Original strand, 7 - 429
Target Start/End: Original strand, 23024278 - 23024703
Alignment:
7 gcaccaaaaggaatgtactcaaaattatttcctttgtagtcaatagagctaccaatgaatctctctggatgaaacctctctggttcagtccagtactttg 106  Q
    |||||||||||||| |||||||| ||| | ||||| |||||||||   ||| | |||||||||||||||| ||||||||||||||| |||||||| ||||    
23024278 gcaccaaaaggaatatactcaaagttactccctttatagtcaatatcactatcgatgaatctctctggataaaacctctctggttcggtccagtaatttg 23024377  T
107 gatctctaccaattgtccatgcatttactatcaccttacttttggctggtatatgatacccttcaatttcacatgcttgtccacattctct---aagtaa 203  Q
    |||||||  |||||| ||| ||||| |||||||||||| | || | ||| || | ||| || || || | ||||| |||  ||||||||||    | |||    
23024378 gatctcttgcaattgcccaagcattgactatcaccttagtcttagttggaatgtcataaccgtctatcttacatgattgagcacattctctcggtattaa 23024477  T
204 aagaggagttggagggtgtaaccttagagtctctttcactactaacttcaaatattcgagttcatttatatagttttcaccaacagctcctttcttgttg 303  Q
    ||| || |  |||||||||||||| || || ||||| || | | | |||||||| |  |||||||| ||| | || ||  ||||   ||||||| | |||    
23024478 aagtggtgccggagggtgtaacctcagggtttctttgacaattgatttcaaataattaagttcattgatacaattctcttcaacccttcctttcatattg 23024577  T
304 aatatttttctcacttcatattgtgctttcttcatcactcttggatcccttactaactctgccattgcccaaactatggtagtggatgatgtttcacctc 403  Q
    || || | || ||| |||  ||||||||||||||| | |||||||| | |||| |  ||||||||||||||| |||||||  | | |||||| |||||||    
23024578 aaaatctctcgcacctcagcttgtgctttcttcattattcttggattctttaccatttctgccattgcccaatctatggtgcttgctgatgtctcacctc 23024677  T
404 cagcaccaatcatgtcctgaaaaata 429  Q
    |||||||||  |||||||||| ||||    
23024678 cagcaccaaaaatgtcctgaacaata 23024703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 7 - 429
Target Start/End: Original strand, 23140052 - 23140477
Alignment:
7 gcaccaaaaggaatgtactcaaaattatttcctttgtagtcaatagagctaccaatgaatctctctggatgaaacctctctggttcagtccagtactttg 106  Q
    ||||||||||||||||||||||||| | | ||||| |||||||||| | | || |||||||||||||||| |||  ||||||||||||||||||| ||||    
23140052 gcaccaaaaggaatgtactcaaaatcactccctttatagtcaatagtgtttcccatgaatctctctggataaaatttctctggttcagtccagtagtttg 23140151  T
107 gatctctaccaattgtccatgcatttactatcaccttacttttggctggtatatgatacccttcaatttcacatgcttgtccacattctct---aagtaa 203  Q
    |||||||  | |||| ||||||||| || | ||||||| | ||   |||||| ||||| || |  || ||||||||||| ||||| |||||    || ||    
23140152 gatctctcgcgattgcccatgcattgacgaccaccttagtcttaaatggtatgtgataaccatgtatctcacatgcttgaccacactctcttggtagcaa 23140251  T
204 aagaggagttggagggtgtaaccttagagtctctttcactactaacttcaaatattcgagttcatttatatagttttcaccaacagctcctttcttgttg 303  Q
    ||||||    |||| ||||||||| |  || ||||| || | | | |||||||| | ||| || || ||  | |||||| ||||   ||||||| | |||    
23140252 aagaggcaccggagtgtgtaacctcaaggtttctttgacgattgatttcaaataatggagctcgttgatgcaattttcatcaacccttcctttcattttg 23140351  T
304 aatatttttctcacttcatattgtgctttcttcatcactcttggatcccttactaactctgccattgcccaaactatggtagtggatgatgtttcacctc 403  Q
    || |  | |||||| |||| |||  |||||||||| | ||||||||||||||  |  ||| ||||||||||| |||||||  | | |||||| |||||||    
23140352 aaaacctctctcacctcatcttgcactttcttcattattcttggatcccttatcatttctaccattgcccaatctatggtgcttgctgatgtctcacctc 23140451  T
404 cagcaccaatcatgtcctgaaaaata 429  Q
    |||||||||  |||||||||| ||||    
23140452 cagcaccaaaaatgtcctgaacaata 23140477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 1 - 191
Target Start/End: Original strand, 22971951 - 22972141
Alignment:
1 cttcctgcaccaaaaggaatgtactcaaaattatttcctttgtagtcaatagagctaccaatgaatctctctggatgaaacctctctggttcagtccagt 100  Q
    ||||| |||||||| |||||||||||||||||  |||||||| | |||| ||| ||| |||| ||||| || |||| |||| | ||||| |||||||| |    
22971951 cttccagcaccaaatggaatgtactcaaaatttgttcctttgaaatcaagagaactatcaataaatctttcaggataaaacttatctggatcagtccaat 22972050  T
101 actttggatctctaccaattgtccatgcatttactatcaccttacttttggctggtatatgatacccttcaatttcacatgcttgtccaca 191  Q
    | |||||||| || ||||||| ||| ||||| | ||||||| ||||||||  |||||| ||||| || ||||| ||||| |||||||||||    
22972051 attttggatcccttccaattgcccaagcattgattatcaccctacttttgattggtatgtgataaccatcaatctcacaagcttgtccaca 22972141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 1 - 191
Target Start/End: Original strand, 22946404 - 22946594
Alignment:
1 cttcctgcaccaaaaggaatgtactcaaaattatttcctttgtagtcaatagagctaccaatgaatctctctggatgaaacctctctggttcagtccagt 100  Q
    ||||| |||||||| |||||||||||||||||  |||||||| | |||| ||| ||| |||| ||||| || |||| |||| | ||||| |||||||| |    
22946404 cttccggcaccaaatggaatgtactcaaaatttgttcctttgaaatcaacagaactatcaataaatctttcaggataaaacttatctggatcagtccaat 22946503  T
101 actttggatctctaccaattgtccatgcatttactatcaccttacttttggctggtatatgatacccttcaatttcacatgcttgtccaca 191  Q
    | |||||||| || ||||||| ||| ||||| | ||||||| |||| |||  |||||| ||||| || ||||| |||||||||||| ||||    
22946504 attttggatcccttccaattgcccaagcattgattatcaccctactattgattggtatgtgataaccatcaatctcacatgcttgtgcaca 22946594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 8 - 197
Target Start/End: Original strand, 23017069 - 23017258
Alignment:
8 caccaaaaggaatgtactcaaaattatttcctttgtagtcaatagagctaccaatgaatctctctggatgaaacctctctggttcagtccagtactttgg 107  Q
    |||||||||||||||| || || ||| | ||||| |||||||||  | |  |||||||||||||||||| |||| ||||||||||||||||||| |||||    
23017069 caccaaaaggaatgtattcgaagttactccctttatagtcaataccgttgtcaatgaatctctctggataaaacttctctggttcagtccagtagtttgg 23017168  T
108 atctctaccaattgtccatgcatttactatcaccttacttttggctggtatatgatacccttcaatttcacatgcttgtccacattctct 197  Q
    ||||||  | |||| ||| ||||| | |||||||||| | ||  ||||||| ||||| || |  || ||||||||||  |||||||||||    
23017169 atctcttgcgattgcccaagcattaattatcaccttagtcttaactggtatgtgataaccatgtatctcacatgctttaccacattctct 23017258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 82 - 197
Target Start/End: Original strand, 23032780 - 23032895
Alignment:
82 ctctctggttcagtccagtactttggatctctaccaattgtccatgcatttactatcaccttacttttggctggtatatgatacccttcaatttcacatg 181  Q
    |||||||||||||||||||| |||||||||||  |||||| ||| ||||| |||||||||||||||||   |||||| ||||| || |  || |||||||    
23032780 ctctctggttcagtccagtagtttggatctcttgcaattgcccaagcattgactatcaccttacttttaattggtatgtgataaccatttatctcacatg 23032879  T
182 cttgtccacattctct 197  Q
    |||| || ||||||||    
23032880 cttgaccgcattctct 23032895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 1 - 197
Target Start/End: Complemental strand, 22941574 - 22941378
Alignment:
1 cttcctgcaccaaaaggaatgtactcaaaattatttcctttgtagtcaatagagctaccaatgaatctctctggatgaaacctctctggttcagtccagt 100  Q
    ||||| |||||||| |||||| |||||||||||||||| || || || | | | ||  |||| || || || |||| ||| |||||||| |||  ||| |    
22941574 cttccagcaccaaatggaatgaactcaaaattatttcccttataatctacacaactttcaataaacctttcaggataaaatctctctgggtcatcccaat 22941475  T
101 actttggatctctaccaattgtccatgcatttactatcaccttacttttggctggtatatgatacccttcaatttcacatgcttgtccacattctct 197  Q
      ||||||||||| ||||| | ||| ||||| |||||||| || |||||    ||||||| |||||| |  ||||||||||||||||||||||||||    
22941474 gatttggatctcttccaatggcccaagcattcactatcactttgcttttaaaaggtatatcatacccatttatttcacatgcttgtccacattctct 22941378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 7 - 197
Target Start/End: Original strand, 22831841 - 22832031
Alignment:
7 gcaccaaaaggaatgtactcaaaattatttcctttgtagtcaatagagctaccaatgaatctctctggatgaaacctctctggttcagtccagtactttg 106  Q
    ||||||||||||||| ||||||||||||| || || ||||| | | | ||| |||||||||| || |||| ||| || ||||| ||   ||| |  ||||    
22831841 gcaccaaaaggaatgaactcaaaattattacccttatagtccacacaactatcaatgaatctttcaggataaaatctttctgggtcgtcccaatgatttg 22831940  T
107 gatctctaccaattgtccatgcatttactatcaccttacttttggctggtatatgatacccttcaatttcacatgcttgtccacattctct 197  Q
    ||||||| ||||| | ||| ||||| |||||||| || |||||    ||||||| |||||| |  || |||||||||| ||||||||||||    
22831941 gatctcttccaatagcccaagcattcactatcactttgcttttaaaaggtatatcatacccatttatctcacatgcttttccacattctct 22832031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 1 - 81
Target Start/End: Original strand, 22986277 - 22986357
Alignment:
1 cttcctgcaccaaaaggaatgtactcaaaattatttcctttgtagtcaatagagctaccaatgaatctctctggatgaaac 81  Q
    ||||| |||||||| |||||||||||||||||| |||||||| | |||||||| ||| |||| || ||||| |||| ||||    
22986277 cttccagcaccaaatggaatgtactcaaaattagttcctttgaaatcaatagaactatcaataaacctctcaggataaaac 22986357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 23032714 - 23032765
Alignment:
1 cttcctgcaccaaaaggaatgtactcaaaattatttcctttgtagtcaatag 52  Q
    ||||| |||||||| |||||||||||||||||| ||||||| ||||||||||    
23032714 cttccggcaccaaagggaatgtactcaaaattacttcctttatagtcaatag 23032765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 313 - 426
Target Start/End: Original strand, 23017377 - 23017490
Alignment:
313 ctcacttcatattgtgctttcttcatcactcttggatcccttactaactctgccattgcccaaactatggtagtggatgatgtttcacctccagcaccaa 412  Q
    |||||||||| ||||||||||||||| | |||||||| |||||  |  |||  |||||||||| || ||||  | | |||||| ||||||||| |||| |    
23017377 ctcacttcatcttgtgctttcttcattattcttggattccttatcatttctatcattgcccaatctgtggtgcttgctgatgtctcacctccaccaccga 23017476  T
413 tcatgtcctgaaaa 426  Q
      ||||||||||||    
23017477 aaatgtcctgaaaa 23017490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 103 - 191
Target Start/End: Complemental strand, 22916769 - 22916681
Alignment:
103 tttggatctctaccaattgtccatgcatttactatcaccttacttttggctggtatatgatacccttcaatttcacatgcttgtccaca 191  Q
    ||||||||||| ||||| | ||| ||||| |||||||| || |||||   |||||||  |||||| |  ||||||||||||||||||||    
22916769 tttggatctcttccaatggcccaagcattcactatcactttgcttttaaatggtataccatacccatttatttcacatgcttgtccaca 22916681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0554 (Bit Score: 75; Significance: 3e-34; HSPs: 1)
Name: scaffold0554
Description:

Target: scaffold0554; HSP #1
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 1 - 426
Target Start/End: Complemental strand, 6754 - 6326
Alignment:
1 cttcctgcaccaaaaggaatgtactcaaaattatttcctttgtagtcaatagagctaccaatgaatctctctggatgaaacctctctggttcagtccagt 100  Q
    ||||| |||||||||||||||||||||||||||   ||||| |||||||||| |||  || ||||||||||||||| ||||||||||||||||||||||     
6754 cttccagcaccaaaaggaatgtactcaaaattaccccctttatagtcaatagtgctgtcagtgaatctctctggataaaacctctctggttcagtccaga 6655  T
101 actttggatctctaccaattgtccatgcatttactatcaccttacttttggctggtatatgatacccttcaatttcacatgcttgtccacattctct--- 197  Q
    | |||||||||||  |||||| ||| ||||| | ||||||||||||  |    ||||| | ||| || |  || ||||||||||  |||||||||||       
6654 agtttggatctcttgcaattgcccaagcattgattatcaccttactcctaaacggtatgttataaccatttatctcacatgctttaccacattctcttgg 6555  T
198 aagtaaaagaggagttggagggtgtaaccttagagtctctttcactactaacttcaaatattcgagttcatttatatagttttcaccaacagctcctttc 297  Q
     || |||||||| | ||||||||||||||| || || ||||| || ||| | |||||||| | |||||   | || || |||||| ||||   ||| |||    
6554 tagcaaaagaggtgctggagggtgtaacctaagggtttctttgacgactgatttcaaataattgagtttgctaatgtaattttcatcaacctttccattc 6455  T
298 ttgttgaatatttttctcacttcatattgtgctttcttcatcactcttggatcccttactaactctgccattgcccaaactatggtagtggatgatgttt 397  Q
        | || | || || ||| |||  |||||||||| |||| | |||||| |||||||  |  ||||||||||||||| ||||||| || | |||||| |    
6454 aatgtaaaaacttctcgcacctcagcttgtgctttcatcattattcttggctcccttatcatttctgccattgcccaatctatggtggttgctgatgtat 6355  T
398 cacctccagcaccaatcatgtcctgaaaa 426  Q
    |||||||||||||||  ||||||| ||||    
6354 cacctccagcaccaaaaatgtcctaaaaa 6326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 39; Significance: 0.0000000000009; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 7 - 197
Target Start/End: Complemental strand, 5594224 - 5594034
Alignment:
7 gcaccaaaaggaatgtactcaaaattatttcctttgtagtcaatagagctaccaatgaatctctctggatgaaacctctctggttcagtccagtactttg 106  Q
    ||||||||||||||| ||||||||||||| || || ||||| | | | ||| |||||||||| || |||| ||| || ||||| ||   ||| |  ||||    
5594224 gcaccaaaaggaatgaactcaaaattattacccttatagtccacacaactatcaatgaatctttcaggataaaatctttctgggtcgtcccaatgatttg 5594125  T
107 gatctctaccaattgtccatgcatttactatcaccttacttttggctggtatatgatacccttcaatttcacatgcttgtccacattctct 197  Q
    ||||||| ||||| | ||| ||||| |||||||| || |||||    ||||||| |||||| |  || |||||||||| ||||||||||||    
5594124 gatctcttccaatagcccaagcattcactatcactttgcttttaaaaggtatatcatacccatttatctcacatgcttttccacattctct 5594034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 34; Significance: 0.0000000009; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 7154533 - 7154492
Alignment:
1 cttcctgcaccaaaaggaatgtactcaaaattatttcctttg 42  Q
    ||||| |||||||||||||| |||||||||||||||||||||    
7154533 cttccagcaccaaaaggaatatactcaaaattatttcctttg 7154492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 88 - 140
Target Start/End: Complemental strand, 41465854 - 41465802
Alignment:
88 ggttcagtccagtactttggatctctaccaattgtccatgcatttactatcac 140  Q
    |||||| |||| |||||||||||||| ||||| | ||||||||||||||||||    
41465854 ggttcactccaatactttggatctcttccaatcgcccatgcatttactatcac 41465802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 2433682 - 2433650
Alignment:
1 cttcctgcaccaaaaggaatgtactcaaaatta 33  Q
    ||||||||||||||||| |||||||||||||||    
2433682 cttcctgcaccaaaaggtatgtactcaaaatta 2433650  T

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