View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14336_low_7 (Length: 595)
Name: NF14336_low_7
Description: NF14336
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14336_low_7 |
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Alignment Details
Target: chr4 (Bit Score: 540; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 540; E-Value: 0
Query Start/End: Original strand, 1 - 580
Target Start/End: Original strand, 2024179 - 2024758
Alignment:
| Q |
1 |
cctcaaaggtatgaattcaaaataaaacaatgtatatgtaactgcaaacatatccatgctttcctcataaaacatgttatattgttccaacactaaccta |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||| |
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| T |
2024179 |
cctcaaaggtatgaattcaaaataaaacaatgtatatgtaactgcaaacatatccatgctttcctcataaaacatgttattttgttccaacaccaaccta |
2024278 |
T |
|
| Q |
101 |
tccaaaaaataacaaaaagaattaatagaaccaattgtactaacctcaaacttgatgatgctcaaattgaataaaaatccctcttgcataacatgtagta |
200 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
2024279 |
tccaaaaaataacaaaaagagttaatagaaccaattgtactaacctcaaacttgatgatgctcaaattgaataaaaatccctcttacataacatgtagta |
2024378 |
T |
|
| Q |
201 |
gttccaactgactgatcactttcaggaaaagcttcgacacatcttcttttccattaaaatgctacattatgagattgaccataaaaaactaataacaaaa |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||| || |
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| T |
2024379 |
gttccaactgactgatcactttcaggaaaagcttcgacacatcttcttttccattaaaatgctacattatgagattgaccgtaaaaaaataataacagaa |
2024478 |
T |
|
| Q |
301 |
atgagataagcatgaaagagctaccttttcattgagcaggagcatgtgcagacttccctcctcggctggattcgtatggtcaggaacactccataggcga |
400 |
Q |
| |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
2024479 |
atgagataagcatgaaagagctaccttttcatcgagcaggagcatgtgcagacttccctcctcggctggattcgtatggtcaggaacactccattggcga |
2024578 |
T |
|
| Q |
401 |
attactctagccgtcaatgtcagatcaatattcccacacttaattccttccacacgagtcatctttggagccacagctaaaacagaaacataaacatgca |
500 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2024579 |
attactctagccgtcaatgccagatcaatattcccacacttaattccttccacacgagtcatctttggagccacagctaaaacagaaacataaacatgca |
2024678 |
T |
|
| Q |
501 |
ttattactttacattcatgaaaaattgcaaatcatgtgtagtgtttgtagaaatgagcattttctttcaacacatataag |
580 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
2024679 |
ttattactttacattcatgaaaaattgcaaatcatgtgtagtgtttgtagaaatgagcattttctttcaacacatataag |
2024758 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 380 - 510
Target Start/End: Original strand, 23319814 - 23319944
Alignment:
| Q |
380 |
tcaggaacactccataggcgaattactctagccgtcaatgtcagatcaatattcccacacttaattccttccacacgagtcatctttggagccacagcta |
479 |
Q |
| |
|
|||||||||||||| ||| ||||||| || | ||||||| ||||||| ||||||||||||| ||||| ||||| ||||||| |||| || | ||| |
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| T |
23319814 |
tcaggaacactccacaggtgaattaccctgactgtcaatgccagatcagtattcccacacttgattccagccacagtagtcatcgttggtgctgtaacta |
23319913 |
T |
|
| Q |
480 |
aaacagaaacataaacatgcattattacttt |
510 |
Q |
| |
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||||| || ||||||||| |||| |||||| |
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|
| T |
23319914 |
aaacacgaagataaacatgaattagtacttt |
23319944 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 380 - 510
Target Start/End: Original strand, 23329981 - 23330111
Alignment:
| Q |
380 |
tcaggaacactccataggcgaattactctagccgtcaatgtcagatcaatattcccacacttaattccttccacacgagtcatctttggagccacagcta |
479 |
Q |
| |
|
|||||||||||||| ||| ||||||| || | ||||||| ||||||| ||||||||||||| ||||| ||||| ||||||| |||| || | ||| |
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| T |
23329981 |
tcaggaacactccacaggtgaattaccctgactgtcaatgccagatcagtattcccacacttgattccagccacagtagtcatcgttggtgctgtaacta |
23330080 |
T |
|
| Q |
480 |
aaacagaaacataaacatgcattattacttt |
510 |
Q |
| |
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||||| || ||||||||| |||| |||||| |
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|
| T |
23330081 |
aaacacgaagataaacatgaattagtacttt |
23330111 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 139 - 196
Target Start/End: Original strand, 22005350 - 22005407
Alignment:
| Q |
139 |
actaacctcaaacttgatgatgctcaaattgaataaaaatccctcttgcataacatgt |
196 |
Q |
| |
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||||||||||||||||||| |||||||| ||||| ||| | | |||||| |||||||| |
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| T |
22005350 |
actaacctcaaacttgatgttgctcaaactgaatgaaagttcatcttgcttaacatgt |
22005407 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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