View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14336_low_9 (Length: 570)
Name: NF14336_low_9
Description: NF14336
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14336_low_9 |
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Alignment Details
Target: chr4 (Bit Score: 324; Significance: 0; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 233 - 556
Target Start/End: Complemental strand, 48606921 - 48606598
Alignment:
| Q |
233 |
aagtttgtggtgcaagaaaagacaatgattttgccaccggcgaatcaatggcgagtttggatactcacatttttggttctatttggaatgttcatagttt |
332 |
Q |
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| T |
48606921 |
aagtttgtggtgcaagaaaagacaatgattttgccaccggcgaatcaatggcgagtttggatactcacatttttggttctatttggaatgttcatagttt |
48606822 |
T |
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| Q |
333 |
gtagctttgatggatgcattggtaagaatgtttttcaaggtttaagttatcgtcgttcacgttatctttttcatgattctcctagtttttatgtttcact |
432 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48606821 |
gtagctttgatggatgcattggtaagaatgtttttcaaggtttaagttatcgtcgttcacgttatctttttcatgattctcctagtttttatgtttcact |
48606722 |
T |
|
| Q |
433 |
tcaagaaaataatgctattagtttagatcaaaaccaacccaacaaaacccatgtttctgttgatgttactttagctgaaaaagttgataaaaacctaaat |
532 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48606721 |
tcaagaaaataatgctattagtttagatcaaaaccaacccaacaaaacccatgtttctgttgatgttactttagctgaaaaagttgataaaaacctaaat |
48606622 |
T |
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| Q |
533 |
agatttgatcttgttaagaataat |
556 |
Q |
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| T |
48606621 |
agatttgatcttgttaagaataat |
48606598 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 276 - 556
Target Start/End: Complemental strand, 48612477 - 48612188
Alignment:
| Q |
276 |
atcaatggcgagtttggatactcacatttttggttctatttggaatgttcatagtttgtagctttgatggatgcattggtaagaatgtttttcaaggttt |
375 |
Q |
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| T |
48612477 |
atcaatggcgaattgggttactcactgttttggttctatttggaatgttcattgtttggagcattgatggatgcactgttaagaatgtttttcaaggttt |
48612378 |
T |
|
| Q |
376 |
aagttatcgtcgttcacgttatctttttcatgattctc---ctagtttttatgtttcacttcaagaaaataatgctattagttt---agatcaaaaccaa |
469 |
Q |
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||| ||||||||||||| ||||||| ||||| ||||| ||| |||| || |||||| |||||| | || ||||||| ||||||||||||| |
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| T |
48612377 |
aaggtatcgtcgttcacattatcttgctcatgtttctcctactacttttaatctttcacatcaagatttgtttcctgttagtttagaagatcaaaaccaa |
48612278 |
T |
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| Q |
470 |
cccaacaaaacccatgt---ttctgttgatgttactttagctgaaaaagttgataaaaacctaaatagatttgatcttgttaagaataat |
556 |
Q |
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| T |
48612277 |
cccaacaatacccatgtttcttctgttaatgttactttagctcaaaaacttgataaaaacctagaaagttttgatcttgttaagaataat |
48612188 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 22 - 165
Target Start/End: Complemental strand, 48607132 - 48606989
Alignment:
| Q |
22 |
ctttgaggttgatgagttctttttggacttgaacctctcaaaagtgnnnnnnnnnnnnnnnnnaagcttaatgtgaaaggccttcaaccaatttctgcat |
121 |
Q |
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| T |
48607132 |
ctttgaggttgatgagttctttttggacttgaacctctcaaaagtgtttttttcttttcttttaagcttaatgtgaaaggccttcaaccaatttctgcat |
48607033 |
T |
|
| Q |
122 |
cctttgcttttgaaccatgatatgaccttgtgagtatcaccacc |
165 |
Q |
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| T |
48607032 |
cctttgcttttgaactgtgatatgaccttgtgagtatcaccacc |
48606989 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 23 - 67
Target Start/End: Complemental strand, 48612729 - 48612685
Alignment:
| Q |
23 |
tttgaggttgatgagttctttttggacttgaacctctcaaaagtg |
67 |
Q |
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| T |
48612729 |
tttgaggttgatgagttctttttggatttgaacctctcaaaagtg |
48612685 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 303 - 367
Target Start/End: Complemental strand, 7447240 - 7447176
Alignment:
| Q |
303 |
ttttggttctatttggaatgttcatagtttgtagctttgatggatgcattggtaagaatgttttt |
367 |
Q |
| |
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||||||||||||||||||||||||| ||||| ||| |||||||||||| || | ||||||||||| |
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| T |
7447240 |
ttttggttctatttggaatgttcattgtttggagcattgatggatgcactgttgagaatgttttt |
7447176 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 303 - 367
Target Start/End: Complemental strand, 7959304 - 7959240
Alignment:
| Q |
303 |
ttttggttctatttggaatgttcatagtttgtagctttgatggatgcattggtaagaatgttttt |
367 |
Q |
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||||||||||||||||||||||||| ||||| ||| |||||||||||| || | ||||| ||||| |
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| T |
7959304 |
ttttggttctatttggaatgttcattgtttggagcattgatggatgcactgttgagaattttttt |
7959240 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 303 - 367
Target Start/End: Complemental strand, 20987069 - 20987005
Alignment:
| Q |
303 |
ttttggttctatttggaatgttcatagtttgtagctttgatggatgcattggtaagaatgttttt |
367 |
Q |
| |
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||||||||||||||||||||||||| ||||| ||| |||||||||||| | | ||||||||||| |
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| T |
20987069 |
ttttggttctatttggaatgttcattgtttggagcattgatggatgcactcttgagaatgttttt |
20987005 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 303 - 367
Target Start/End: Original strand, 3802313 - 3802377
Alignment:
| Q |
303 |
ttttggttctatttggaatgttcatagtttgtagctttgatggatgcattggtaagaatgttttt |
367 |
Q |
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|||||||| |||||||||||||||| ||||| ||| |||||||||||| || | ||||| ||||| |
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| T |
3802313 |
ttttggttttatttggaatgttcattgtttggagcattgatggatgcactgttgagaattttttt |
3802377 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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