View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14337_high_19 (Length: 298)
Name: NF14337_high_19
Description: NF14337
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14337_high_19 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 267; Significance: 1e-149; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 1 - 279
Target Start/End: Complemental strand, 34628834 - 34628556
Alignment:
| Q |
1 |
gactagggtttgtgttcttttccattagttgcaaaatctagtcttcaaagtgtcttgaggactgctcatgttttcatatgaatgatttcatatggttttg |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34628834 |
gactagggtttgtgttcttttccattagttgcataatctagtcttcaaagtgtcttgaggactgctcatgttttcatatgaatgatttcatatggttttg |
34628735 |
T |
|
| Q |
101 |
ttatgtactttctattatgctctttgtcaaattaggcacttaattgatgaagaaagattttgatttaagaatatatctatatctatgcttctacttcaac |
200 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34628734 |
ttatgtactctctattatgctctttgtcaaattaggcacttaattgatgaagaaagattttgatttaagaatatatctatatctatgcttctacttcaac |
34628635 |
T |
|
| Q |
201 |
ctgaatatatctatgcttccacatgatgtgaatgagcatgcactaagctcgagcatttcctcatgtaattattgttaaa |
279 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
34628634 |
ctgaatatatctatgcttccacatgatgtgaatgagcatgcactaagcttgagcatttcctcatgtaattattgttaaa |
34628556 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University