View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14337_high_20 (Length: 292)
Name: NF14337_high_20
Description: NF14337
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14337_high_20 |
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Alignment Details
Target: chr7 (Bit Score: 223; Significance: 1e-123; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 1 - 291
Target Start/End: Original strand, 2690363 - 2690652
Alignment:
| Q |
1 |
gcaaactgctgagtcaaataatagagacaaatgaaatttgtggaatttagataaaagtcatat-aagttagataaaagtctttttcnnnnnnnnnnnngt |
99 |
Q |
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| T |
2690363 |
gcaaactgctgagtcaaataatagagacaaatgaaatttgtagaatttagataaaagtcatattaagttagataaaagtctttttcacaaaaaaaa--gt |
2690460 |
T |
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| Q |
100 |
tagataaaagtcttctataaaacacatgtgttagaatagagtacaataaagatgaaataaaattgttgattcaactataagagtcaagattcaaatacct |
199 |
Q |
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||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
2690461 |
aagataaaagtcttgtataaaacacatgtgttagaatagagtacaataaagatgaaataaaattgttgattctactataagagtcaagattcaaatacct |
2690560 |
T |
|
| Q |
200 |
tttgtggaatttaaacagtaaaggagacaagatatagacctgtgatgtagtcctaaaccaagttcactaaaaatatttttatttgttatatg |
291 |
Q |
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| T |
2690561 |
tttgttgaatttaaacagtaaaggagacaagatatagacctgtgatgtagtcctaaaccaagttcactaaaaatatttttatttgttatatg |
2690652 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 141 - 229
Target Start/End: Complemental strand, 2059152 - 2059065
Alignment:
| Q |
141 |
tacaataaagatgaaataaaattgttgattcaactataagagtcaagattcaaataccttttgtggaatttaaacagtaaaggagacaa |
229 |
Q |
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||||||||||||||||||||||||| || |||||||||||| |||||| |||||| | ||| ||||||||||||| ||| |||||||| |
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| T |
2059152 |
tacaataaagatgaaataaaattgtagaatcaactataagacccaagatgcaaatatc-tttctggaatttaaacaataatggagacaa |
2059065 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 226 - 259
Target Start/End: Original strand, 2244473 - 2244506
Alignment:
| Q |
226 |
acaagatatagacctgtgatgtagtcctaaacca |
259 |
Q |
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||||||||||||| |||||||||||||||||||| |
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| T |
2244473 |
acaagatatagacatgtgatgtagtcctaaacca |
2244506 |
T |
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