View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14337_high_22 (Length: 268)
Name: NF14337_high_22
Description: NF14337
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14337_high_22 |
 | |
|
| [»] scaffold0047 (1 HSPs) |
| | |
|
| [»] scaffold0005 (1 HSPs) |
| | |
|
Alignment Details
Target: chr1 (Bit Score: 199; Significance: 1e-108; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 19 - 265
Target Start/End: Original strand, 26034169 - 26034416
Alignment:
| Q |
19 |
tatgcttgctgggaatgtatgcagcttgcagggaacacacgaggatggtggtggtaacattgtaggatttataagcttcttaatccttcatgacnnnnnn |
118 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26034169 |
tatgcttgctgggaatgtatgcagcttgcagagaacacacgaggatggtggtggtaacattgtaggatttataagcttcttaatccttcatgacaaaaaa |
26034268 |
T |
|
| Q |
119 |
nttcattacaaattcaattgcttttttaaagttcaagattaatgttttaaatata-catcttagtgggtgggtcatgctgcaaacaaatctatgccattc |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26034269 |
attcattacaaattcaattgcttttttaaagttcaagattaatgttttaaatatatcatcctagtgggtgggtcatgctgcaaacaaatctatgccattc |
26034368 |
T |
|
| Q |
218 |
aaaatcttctttctaaatctaatggttgacatcgattttgaaattaaa |
265 |
Q |
| |
|
|||| |||||||||||||||||||| || ||||||||||||||||||| |
|
|
| T |
26034369 |
aaaaccttctttctaaatctaatggctggcatcgattttgaaattaaa |
26034416 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 195; Significance: 1e-106; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 19 - 265
Target Start/End: Complemental strand, 6090779 - 6090532
Alignment:
| Q |
19 |
tatgcttgctgggaatgtatgcagcttgcagggaacacacgaggatggtggtggtaacattgtaggatttataagcttcttaatccttcatgacnnnnnn |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6090779 |
tatgcttgctgggaatgtatgcagcttgcagggaacacacgaggatggtggtggtaacattgtaggatttataagcttcttaatccttcatgacaaaaaa |
6090680 |
T |
|
| Q |
119 |
nttcattacaaattcaattgcttttttaaagttcaagattaatgttttaaatata-catcttagtgggtgggtcatgctgcaaacaaatctatgccattc |
217 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6090679 |
attcattacaaattcaattgctttttaaaagttcaagattaatgttttaaatataccatcctagtgggtgggtcatgctgcaaacaaatctatgccattc |
6090580 |
T |
|
| Q |
218 |
aaaatcttctttctaaatctaatggttgacatcgattttgaaattaaa |
265 |
Q |
| |
|
|||| ||| |||||||||||||||| || ||||||||||||||||||| |
|
|
| T |
6090579 |
aaaaccttttttctaaatctaatggctggcatcgattttgaaattaaa |
6090532 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 185 - 242
Target Start/End: Complemental strand, 13882672 - 13882615
Alignment:
| Q |
185 |
gtgggtcatgctgcaaacaaatctatgccattcaaaatcttctttctaaatctaatgg |
242 |
Q |
| |
|
|||||||| |||| || |||||| ||||||||||||| ||||||||||||| ||||| |
|
|
| T |
13882672 |
gtgggtcaacctgccaagaaatctgtgccattcaaaatgttctttctaaatccaatgg |
13882615 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 185 - 242
Target Start/End: Complemental strand, 14022797 - 14022740
Alignment:
| Q |
185 |
gtgggtcatgctgcaaacaaatctatgccattcaaaatcttctttctaaatctaatgg |
242 |
Q |
| |
|
|||||||| |||| || |||||| ||||||||||||| ||||||||||||| ||||| |
|
|
| T |
14022797 |
gtgggtcaacctgccaagaaatctgtgccattcaaaatgttctttctaaatccaatgg |
14022740 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0047 (Bit Score: 187; Significance: 1e-101; HSPs: 1)
Name: scaffold0047
Description:
Target: scaffold0047; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 15 - 265
Target Start/End: Original strand, 31400 - 31651
Alignment:
| Q |
15 |
aatatatgcttgctgggaatgtatgcagcttgcagggaacacacgaggatggtggtggtaacattgtaggatttataagcttcttaatccttcatgacnn |
114 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31400 |
aatatatgcttgttgggaatgtatgcagcttgcagggaacacacgaggatggtggtggtaacattgtaggatttataagcttcttaatccttcatgacaa |
31499 |
T |
|
| Q |
115 |
nnnnnttcattacaaattcaattgcttttttaaagttcaagattaatgttttaaatata-catcttagtgggtgggtcatgctgcaaacaaatctatgcc |
213 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||| || |||||||| ||||||||||||||||||||| | |
|
|
| T |
31500 |
aaaaattcattacaaattcagttgcttttttaaagttcaagattaatgttttaaatataccatcctaatgggtgggccatgctgcaaacaaatctatgtc |
31599 |
T |
|
| Q |
214 |
attcaaaatcttctttctaaatctaatggttgacatcgattttgaaattaaa |
265 |
Q |
| |
|
|||||||| |||||||||||||||||||| || ||||||||||||||||||| |
|
|
| T |
31600 |
attcaaaaccttctttctaaatctaatggatggcatcgattttgaaattaaa |
31651 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0005 (Bit Score: 187; Significance: 1e-101; HSPs: 1)
Name: scaffold0005
Description:
Target: scaffold0005; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 15 - 265
Target Start/End: Complemental strand, 5133 - 4882
Alignment:
| Q |
15 |
aatatatgcttgctgggaatgtatgcagcttgcagggaacacacgaggatggtggtggtaacattgtaggatttataagcttcttaatccttcatgacnn |
114 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5133 |
aatatatgcttgttgggaatgtatgcagcttgcagggaacacacgaggatggtggtggtaacattgtaggatttataagcttcttaatccttcatgacaa |
5034 |
T |
|
| Q |
115 |
nnnnnttcattacaaattcaattgcttttttaaagttcaagattaatgttttaaatata-catcttagtgggtgggtcatgctgcaaacaaatctatgcc |
213 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||| || |||||||| ||||||||||||||||||||| | |
|
|
| T |
5033 |
aaaaattcattacaaattcagttgcttttttaaagttcaagattaatgttttaaatataccatcctaatgggtgggccatgctgcaaacaaatctatgtc |
4934 |
T |
|
| Q |
214 |
attcaaaatcttctttctaaatctaatggttgacatcgattttgaaattaaa |
265 |
Q |
| |
|
|||||||| |||||||||||||||||||| || ||||||||||||||||||| |
|
|
| T |
4933 |
attcaaaaccttctttctaaatctaatggatggcatcgattttgaaattaaa |
4882 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 187; Significance: 1e-101; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 15 - 265
Target Start/End: Original strand, 14834566 - 14834817
Alignment:
| Q |
15 |
aatatatgcttgctgggaatgtatgcagcttgcagggaacacacgaggatggtggtggtaacattgtaggatttataagcttcttaatccttcatgacnn |
114 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14834566 |
aatatatgcttgttgggaatgtatgcagcttgcagggaacacacgaggatggtggtggtaacattgtaggatttataagcttcttaatccttcatgacaa |
14834665 |
T |
|
| Q |
115 |
nnnnnttcattacaaattcaattgcttttttaaagttcaagattaatgttttaaatata-catcttagtgggtgggtcatgctgcaaacaaatctatgcc |
213 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||| || |||||||| ||||||||||||||||||||| | |
|
|
| T |
14834666 |
aaaaattcattacaaattcagttgcttttttaaagttcaagattaatgttttaaatataccatcctaatgggtgggccatgctgcaaacaaatctatgtc |
14834765 |
T |
|
| Q |
214 |
attcaaaatcttctttctaaatctaatggttgacatcgattttgaaattaaa |
265 |
Q |
| |
|
|||||||| |||||||||||||||||||| || ||||||||||||||||||| |
|
|
| T |
14834766 |
attcaaaaccttctttctaaatctaatggatggcatcgattttgaaattaaa |
14834817 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 171; E-Value: 7e-92
Query Start/End: Original strand, 19 - 241
Target Start/End: Complemental strand, 52105984 - 52105762
Alignment:
| Q |
19 |
tatgcttgctgggaatgtatgcagcttgcagggaacacacgaggatggtggtggtaacattgtaggatttataagcttcttaatccttcatgacnnnnnn |
118 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52105984 |
tatgcttgctgg-aatgtatgcagcttgcagggaacacacgaggatggtggtggtaacattgtaggatttataagcttcttaatccttcatgacaaaaaa |
52105886 |
T |
|
| Q |
119 |
nttcattacaaattcaattgcttttttaaagttcaagattaatgttttaaatata-catcttagtgggtgggtcatgctgcaaacaaatctatgccattc |
217 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||| |||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
52105885 |
attcattacaaattcaattgcttttttaaagttcaaaattaatgttttaaatatatcatcctagtgggtgggtcatgctgcaaacaaatttatgccattc |
52105786 |
T |
|
| Q |
218 |
aaaatcttctttctaaatctaatg |
241 |
Q |
| |
|
|||| ||||||||||||||||||| |
|
|
| T |
52105785 |
aaaaccttctttctaaatctaatg |
52105762 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 185 - 242
Target Start/End: Complemental strand, 23568369 - 23568312
Alignment:
| Q |
185 |
gtgggtcatgctgcaaacaaatctatgccattcaaaatcttctttctaaatctaatgg |
242 |
Q |
| |
|
|||||||| |||| || |||||| ||||||||||||| ||||||||||||| ||||| |
|
|
| T |
23568369 |
gtgggtcaatctgccaagaaatctgtgccattcaaaatgttctttctaaatccaatgg |
23568312 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 172; Significance: 2e-92; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 19 - 265
Target Start/End: Original strand, 48158449 - 48158697
Alignment:
| Q |
19 |
tatgcttgctgggaatgtatgcagcttgcagggaacacacgaggatggtggtggtaacattgtaggatttataagcttcttaatccttcatgacnnnnnn |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48158449 |
tatgcttgctgggaatgtatgcagcttgcaggaaacacgcgaggatggtggtggtaacattgtaggatttataagcttcttaatccttcatgacaaaaaa |
48158548 |
T |
|
| Q |
119 |
nttcattacaaattcaattgcttttttaaagttcaagattaatgttttaaatata-catcttagtgggtgggtcatgctgcaaacaaatctatgcca-tt |
216 |
Q |
| |
|
|| |||||||||||||||| |||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||| ||||| | || |
|
|
| T |
48158549 |
atttattacaaattcaattgtttttttaaagttcaagattaatgttttaaatataccatcctagtgggtgggtcatgctgcaaacaaatatatgctattt |
48158648 |
T |
|
| Q |
217 |
caaaatcttctttctaaatctaatggttgacatcgattttgaaattaaa |
265 |
Q |
| |
|
||||| |||||||||||||||||||| || ||||||||||||||||||| |
|
|
| T |
48158649 |
caaaaccttctttctaaatctaatggctggcatcgattttgaaattaaa |
48158697 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 186 - 242
Target Start/End: Complemental strand, 52865775 - 52865719
Alignment:
| Q |
186 |
tgggtcatgctgcaaacaaatctatgccattcaaaatcttctttctaaatctaatgg |
242 |
Q |
| |
|
||||||| |||| || |||||||||||||||||||| |||||||||||| ||||| |
|
|
| T |
52865775 |
tgggtcaacctgccaagaaatctatgccattcaaaatgctctttctaaatccaatgg |
52865719 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 166; Significance: 6e-89; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 166; E-Value: 6e-89
Query Start/End: Original strand, 19 - 265
Target Start/End: Original strand, 41806965 - 41807216
Alignment:
| Q |
19 |
tatgcttgctgggaatgtatgcagcttgcagggaacac----acgaggatggtggtggtaacattgtaggatttataagcttcttaatccttcatgacnn |
114 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41806965 |
tatgcttgcggggaatgtatgcagcttgcagggaacacacacacgaggatggtggtggtaacattgtaggatttataagcttcttaatccttcatgacaa |
41807064 |
T |
|
| Q |
115 |
nnnnnttcattacaaattcaattgcttttttaaagttcaagattaatgttttaaatata-catcttagtgggtgggtcatgctgcaaacaaatctatgcc |
213 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||| ||||||| |||||||||||||||||| | |
|
|
| T |
41807065 |
aaaaattcattacaaattcaattgcttttttaaagttcaagattaatgttttaaatataccatcctagtggatgggtcaagctgcaaacaaatctatgtc |
41807164 |
T |
|
| Q |
214 |
attcaaaatcttctttctaaatctaatggttgacatcgattttgaaattaaa |
265 |
Q |
| |
|
|||||||| ||||||||||| |||||||| | ||||||||||| |||||||| |
|
|
| T |
41807165 |
attcaaaaccttctttctaattctaatggctcacatcgattttaaaattaaa |
41807216 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 185 - 242
Target Start/End: Complemental strand, 5950183 - 5950126
Alignment:
| Q |
185 |
gtgggtcatgctgcaaacaaatctatgccattcaaaatcttctttctaaatctaatgg |
242 |
Q |
| |
|
|||||||| ||||||| |||||| ||||||||||||| ||||||||||||| ||||| |
|
|
| T |
5950183 |
gtgggtcaacctgcaaagaaatctgtgccattcaaaatgttctttctaaatccaatgg |
5950126 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 138; Significance: 3e-72; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 34 - 265
Target Start/End: Original strand, 6231623 - 6231855
Alignment:
| Q |
34 |
tgtatgcagcttgcagggaacacacgaggatggtggtggtaacattgtaggatttataagcttcttaatccttcatgacnnnnnnnttcattacaaattc |
133 |
Q |
| |
|
|||||||| |||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||| |||||||||| |
|
|
| T |
6231623 |
tgtatgcatcttgtagggaacacacgaggatggtgggggtaacattgtaggatttataagcttcttaatccttcatgacaaaaaaattcgttacaaattc |
6231722 |
T |
|
| Q |
134 |
aattgcttttttaaagttcaagattaatgttttaaatata-catcttagtgggtgggtcatgctgcaaacaaatctatgccattcaaaatcttctttcta |
232 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||| |||| || ||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
6231723 |
acttgcttttttaaagttcaagattaatgttttaaatatatcatccta----gtgggtcatgctgcaaacaaatctatgccattcaaaagcttctttcta |
6231818 |
T |
|
| Q |
233 |
aatc----taatggttgacatcgattttgaaattaaa |
265 |
Q |
| |
|
|||| |||| |||| ||||||||||||||||||| |
|
|
| T |
6231819 |
aatctaattaatagttggcatcgattttgaaattaaa |
6231855 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 186 - 242
Target Start/End: Original strand, 15517672 - 15517728
Alignment:
| Q |
186 |
tgggtcatgctgcaaacaaatctatgccattcaaaatcttctttctaaatctaatgg |
242 |
Q |
| |
|
||||||| |||| || |||||| ||||||||||||| ||||||||||||| ||||| |
|
|
| T |
15517672 |
tgggtcaacctgccaaaaaatctgtgccattcaaaatgttctttctaaatccaatgg |
15517728 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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