View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14337_high_23 (Length: 260)
Name: NF14337_high_23
Description: NF14337
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14337_high_23 |
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Alignment Details
Target: chr4 (Bit Score: 123; Significance: 3e-63; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 88 - 251
Target Start/End: Complemental strand, 50070016 - 50069857
Alignment:
| Q |
88 |
tttgtgtcttcttaatcttccaatgtaatcctccaacttaccaagccttcctactatcgtcattaaacatgagtgtgcttcccagtttgttgttgttttc |
187 |
Q |
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| T |
50070016 |
tttgtgtcttcttaatcttccaatgtaatcctccaacttaccaagccttcctactatcgtca----acatgagtgtgcttcccaatttgttgttgttttc |
50069921 |
T |
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| Q |
188 |
ttaatttaagttagcttaatttctgttgaaataaagtgttcacttgttaatttctccctttgct |
251 |
Q |
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| T |
50069920 |
ttaatttaagttagcttaatttccgttaaaataaattgatcacttgttaatttctccttttgct |
50069857 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 115 - 251
Target Start/End: Complemental strand, 50075995 - 50075873
Alignment:
| Q |
115 |
atcctccaacttaccaagccttcctactatcgtcattaaacatgagtgtgcttcccagtttgttgttgttttcttaatttaagttagcttaatttctgtt |
214 |
Q |
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| T |
50075995 |
atcctccaacttaccaagccttcctactatcgtcattaaaaatgagtgtgcttgtcagtttgttgttgttttcttaatttaagt--------------tt |
50075910 |
T |
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| Q |
215 |
gaaataaagtgttcacttgttaatttctccctttgct |
251 |
Q |
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| T |
50075909 |
gaaataaagtgttcacttgttaatttctccttttgct |
50075873 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 20 - 95
Target Start/End: Complemental strand, 50070323 - 50070248
Alignment:
| Q |
20 |
aatccatcctccaatttaccaagtctagctactatcatcactaaacatgaccgtgcttgctagttgtttttgtgtc |
95 |
Q |
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| T |
50070323 |
aatccatcctccaatttaccaagtctagctactatcatcagtgaacatgagtgttcttgctagttttctttgtgtc |
50070248 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 72 - 116
Target Start/End: Complemental strand, 50078704 - 50078660
Alignment:
| Q |
72 |
gtgcttgctagttgtttttgtgtcttcttaatcttccaatgtaat |
116 |
Q |
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| T |
50078704 |
gtgcttgctagttgtttttgtgtcttcttaatcttccaatgtaat |
50078660 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 72 - 116
Target Start/End: Complemental strand, 10797114 - 10797070
Alignment:
| Q |
72 |
gtgcttgctagttgtttttgtgtcttcttaatcttccaatgtaat |
116 |
Q |
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| T |
10797114 |
gtgcttgctagttgtttttgtgtcttcttaatcttccaatgtaat |
10797070 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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