View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14337_high_28 (Length: 237)

Name: NF14337_high_28
Description: NF14337
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14337_high_28
NF14337_high_28
[»] chr6 (29 HSPs)
chr6 (16-219)||(4265713-4265916)
chr6 (66-219)||(4618620-4618773)
chr6 (30-219)||(4575738-4575927)
chr6 (62-219)||(4623622-4623779)
chr6 (65-217)||(4502951-4503103)
chr6 (76-219)||(4507240-4507383)
chr6 (63-219)||(4517656-4517812)
chr6 (60-219)||(4581327-4581486)
chr6 (65-219)||(3173321-3173475)
chr6 (16-219)||(4471186-4471386)
chr6 (65-219)||(4513635-4513792)
chr6 (62-217)||(4594325-4594480)
chr6 (30-219)||(4561945-4562134)
chr6 (30-219)||(4482148-4482337)
chr6 (62-219)||(4627465-4627622)
chr6 (94-217)||(4488855-4488978)
chr6 (76-219)||(4612374-4612517)
chr6 (17-217)||(4462480-4462677)
chr6 (65-217)||(4258834-4258986)
chr6 (62-213)||(4599478-4599629)
chr6 (53-217)||(4558431-4558595)
chr6 (53-217)||(4586938-4587102)
chr6 (16-199)||(4298174-4298357)
chr6 (53-217)||(4572272-4572436)
chr6 (87-217)||(4603450-4603580)
chr6 (66-217)||(4565348-4565499)
chr6 (96-219)||(4569423-4569542)
chr6 (153-206)||(4255478-4255531)
chr6 (157-192)||(4483534-4483569)
[»] chr5 (2 HSPs)
chr5 (16-219)||(24104364-24104567)
chr5 (147-208)||(26903609-26903670)
[»] chr7 (1 HSPs)
chr7 (65-219)||(3088063-3088217)
[»] chr3 (1 HSPs)
chr3 (99-219)||(1282785-1282905)
[»] scaffold0475 (1 HSPs)
scaffold0475 (88-219)||(2165-2296)
[»] scaffold0288 (1 HSPs)
scaffold0288 (88-219)||(2107-2238)
[»] scaffold0199 (1 HSPs)
scaffold0199 (76-210)||(1087-1221)
[»] chr8 (2 HSPs)
chr8 (76-210)||(1675850-1675984)
chr8 (104-219)||(20862466-20862581)


Alignment Details
Target: chr6 (Bit Score: 196; Significance: 1e-107; HSPs: 29)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 16 - 219
Target Start/End: Complemental strand, 4265916 - 4265713
Alignment:
Q  16 caaagggttgaaggaagttcgtcatgattgattgcacaagagggtatatgtcttgagtagcatcaccattgccttccattggagttagaccatctggtat 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4265916 caaagggttgaaggaagttcgtcatgattgattgcacaagagggtatatgtcttgagtagcatcaccattgccttccattggagttagaccatctggtat 4265817  T
Q  116 ggtctcaaacttaaagtcactgaaaccatcaagagaatttggacctcttgatttgagcaagcgtttgtgattgtattcggtgttaacaaaggttatgtga 215  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||    
T  4265816 ggtctcaaacttaaagtcactgaaaccatcaagagaatttggacctcttgatttgagcaagcgtttgtgattgtattcagtgttgacaaaggttatgtga 4265717  T
Q  216 aagc 219  Q
    ||||    
T  4265716 aagc 4265713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 66 - 219
Target Start/End: Original strand, 4618620 - 4618773
Alignment:
Q  66 tcttgagtagcatcaccattgccttccattggagttagaccatctggtatggtctcaaacttaaagtcactgaaaccatcaagagaatttggacctcttg 165  Q
    |||||| || |||||||||  ||||||||||| |||| ||||||||| ||| ||||||| ||||||||  |||||||||||| ||  |||||||||||||    
T  4618620 tcttgactaacatcaccatcaccttccattggtgttaaaccatctggaatgctctcaaagttaaagtccgtgaaaccatcaaaagcctttggacctcttg 4618719  T
Q  166 atttgagcaagcgtttgtgattgtattcggtgttaacaaaggttatgtgaaagc 219  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4618720 atttgagcaagcgtttgtgattgtattcggtgttaacaaaggttatgtgaaagc 4618773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 30 - 219
Target Start/End: Original strand, 4575738 - 4575927
Alignment:
Q  30 aagttcgtcatgattgattgcacaagagggtatatgtcttgagtagcatcaccattgccttccattggagttagaccatctggtatggtctcaaacttaa 129  Q
    |||||||| ||||||||||   |||||| || || ||||||| |  |||||||||| || ||| ||||||||| |||||||||||| |||||||| ||||    
T  4575738 aagttcgttatgattgattcaccaagagagtgtaggtcttgacttacatcaccattaccatcctttggagttaaaccatctggtatagtctcaaagttaa 4575837  T
Q  130 agtcactgaaaccatcaagagaatttggacctcttgatttgagcaagcgtttgtgattgtattcggtgttaacaaaggttatgtgaaagc 219  Q
    ||||| ||||||||||||  | ||||  |||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||    
T  4575838 agtcagtgaaaccatcaaaggcattttcacctcttgatttgagcaaacgtttgtgattgtattcagtgttaacaaaggttatgtgaaagc 4575927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 62 - 219
Target Start/End: Original strand, 4623622 - 4623779
Alignment:
Q  62 tatgtcttgagtagcatcaccattgccttccattggagttagaccatctggtatggtctcaaacttaaagtcactgaaaccatcaagagaatttggacct 161  Q
    |||||||||| || |||||||||  ||||||||||| |||| ||||||||| ||||||||||| ||||||||  ||||||||||||  |  |||||||||    
T  4623622 tatgtcttgactaacatcaccatcaccttccattggtgttaaaccatctggaatggtctcaaagttaaagtccgtgaaaccatcaaaggcctttggacct 4623721  T
Q  162 cttgatttgagcaagcgtttgtgattgtattcggtgttaacaaaggttatgtgaaagc 219  Q
    ||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||    
T  4623722 cttgatttgagcaagcgtttgtgattgtattcggtgtgaccaaaggttatgtgaaagc 4623779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 65 - 217
Target Start/End: Complemental strand, 4503103 - 4502951
Alignment:
Q  65 gtcttgagtagcatcaccattgccttccattggagttagaccatctggtatggtctcaaacttaaagtcactgaaaccatcaagagaatttggacctctt 164  Q
    ||||||| || |||||||||  |||||||  ||||||| |||||||||||||||||||||  |||| ||| ||||||||||||  | |||||||||||||    
T  4503103 gtcttgactaacatcaccatcaccttccaccggagttaaaccatctggtatggtctcaaaggtaaaatcattgaaaccatcaaaggcatttggacctctt 4503004  T
Q  165 gatttgagcaagcgtttgtgattgtattcggtgttaacaaaggttatgtgaaa 217  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  4503003 gatttgagcaagcgtttgtgattgtattcggtgttgacaaaggttatgtgaaa 4502951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 76 - 219
Target Start/End: Original strand, 4507240 - 4507383
Alignment:
Q  76 catcaccattgccttccattggagttagaccatctggtatggtctcaaacttaaagtcactgaaaccatcaagagaatttggacctcttgatttgagcaa 175  Q
    |||||||||  || ||||||||||||| |||||||||||  |||||||| ||||| ||| ||||||||||||  | ||||  ||||||||||||||||||    
T  4507240 catcaccatcaccatccattggagttaaaccatctggtagagtctcaaagttaaaatcagtgaaaccatcaaaggcattttcacctcttgatttgagcaa 4507339  T
Q  176 gcgtttgtgattgtattcggtgttaacaaaggttatgtgaaagc 219  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  4507340 gcgtttgtgattgtattcggtgttaacaaaggttatgtgaaagc 4507383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 63 - 219
Target Start/End: Original strand, 4517656 - 4517812
Alignment:
Q  63 atgtcttgagtagcatcaccattgccttccattggagttagaccatctggtatggtctcaaacttaaagtcactgaaaccatcaagagaatttggacctc 162  Q
    ||||||||| || ||||||||| |||||| || ||||||| ||||||||| || ||||||||  |||| ||| ||||||||||||  |  ||||||||||    
T  4517656 atgtcttgactaacatcaccatcgccttctatcggagttaaaccatctggaatagtctcaaaggtaaaatcagtgaaaccatcaaaggcttttggacctc 4517755  T
Q  163 ttgatttgagcaagcgtttgtgattgtattcggtgttaacaaaggttatgtgaaagc 219  Q
    ||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||    
T  4517756 ttgatttgagcaaacgtttgtgattgtattcggtgttgacaaaggttatgtgaaagc 4517812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 60 - 219
Target Start/End: Original strand, 4581327 - 4581486
Alignment:
Q  60 tatatgtcttgagtagcatcaccattgccttccattggagttagaccatctggtatggtctcaaacttaaagtcactgaaaccatcaagagaatttggac 159  Q
    |||||||||||| || |||||| || |||||| || ||||||| ||||||||| || ||||||||  |||| ||  ||||||||||||  |  |||||||    
T  4581327 tatatgtcttgattaacatcactatcgccttctatcggagttaaaccatctggaatagtctcaaaggtaaaatcggtgaaaccatcaaacgcttttggac 4581426  T
Q  160 ctcttgatttgagcaagcgtttgtgattgtattcggtgttaacaaaggttatgtgaaagc 219  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  4581427 ctcttgatttgagcaagcgtttgtgattgtattcggtgttgacaaaggttatgtgaaagc 4581486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 65 - 219
Target Start/End: Original strand, 3173321 - 3173475
Alignment:
Q  65 gtcttgagtagcatcaccattgccttccattggagttagaccatctggtatggtctcaaacttaaagtcactgaaaccatcaagagaatttggacctctt 164  Q
    ||||||| || |||||||||  |||||||||| ||||| |||||||||||| |||||||| ||||| ||| ||||||||||||  | |||||||||  ||    
T  3173321 gtcttgactaacatcaccatcaccttccattgaagttaaaccatctggtatagtctcaaagttaaaatcattgaaaccatcaaaggcatttggacccttt 3173420  T
Q  165 gatttgagcaagcgtttgtgattgtattcggtgttaacaaaggttatgtgaaagc 219  Q
    ||||||||||| ||||||||||||||||| ||||| |||||||||||||||||||    
T  3173421 gatttgagcaaccgtttgtgattgtattcagtgtttacaaaggttatgtgaaagc 3173475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 16 - 219
Target Start/End: Original strand, 4471186 - 4471386
Alignment:
Q  16 caaagggttgaaggaagttcgtcatgattgattgcacaagagggtatatgtcttgagtagcatcaccattgccttccattggagttagaccatctggtat 115  Q
    |||||||||||||||||| ||||||||||||| | | ||  | || |||||||||| ||  ||||||| |   |||||||| ||| | ||||| ||| ||    
T  4471186 caaagggttgaaggaagtccgtcatgattgatcgaaaaaaggagtgtatgtcttgaataagatcaccact---ttccattgcagtaaaaccatttggaat 4471282  T
Q  116 ggtctcaaacttaaagtcactgaaaccatcaagagaatttggacctcttgatttgagcaagcgtttgtgattgtattcggtgttaacaaaggttatgtga 215  Q
    ||||||||| ||||||||| ||||||||||||||||||  ||||||||||| |||||||||  ||||||||||||||| ||||| ||||| |||||||||    
T  4471283 ggtctcaaagttaaagtcagtgaaaccatcaagagaatcaggacctcttgaattgagcaaggctttgtgattgtattcagtgttgacaaacgttatgtga 4471382  T
Q  216 aagc 219  Q
    ||||    
T  4471383 aagc 4471386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 65 - 219
Target Start/End: Complemental strand, 4513792 - 4513635
Alignment:
Q  65 gtcttgagtagcatcacca---ttgccttccattggagttagaccatctggtatggtctcaaacttaaagtcactgaaaccatcaagagaatttggacct 161  Q
    |||||||||||||||||||   | ||| ||||||||||||| |||||| || || ||||||||   ||| ||  |||||||||||| || ||| ||||||    
T  4513792 gtcttgagtagcatcaccaccatcgccatccattggagttaaaccatcaggaatagtctcaaagcgaaaatcggtgaaaccatcaaaagcattaggacct 4513693  T
Q  162 cttgatttgagcaagcgtttgtgattgtattcggtgttaacaaaggttatgtgaaagc 219  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  4513692 cttgatttgagcaaacgtttgtgattgtattcggtgttaacaaaggttatgtgaaagc 4513635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 62 - 217
Target Start/End: Original strand, 4594325 - 4594480
Alignment:
Q  62 tatgtcttgagtagcatcaccattgccttccattggagttagaccatctggtatggtctcaaacttaaagtcactgaaaccatcaagagaatttggacct 161  Q
    |||||||||| || |||||||||  ||||||||||| |||||||||||||||||||| |||||  ||||  ||  ||||||||| |  | ||||||||||    
T  4594325 tatgtcttgactaacatcaccatcaccttccattggtgttagaccatctggtatggtttcaaagctaaaaccagggaaaccatctaaggcatttggacct 4594424  T
Q  162 cttgatttgagcaagcgtttgtgattgtattcggtgttaacaaaggttatgtgaaa 217  Q
    |||||||||||||| ||||| ||||||||||| ||||| |||||||||||||||||    
T  4594425 cttgatttgagcaaacgtttatgattgtattcagtgttgacaaaggttatgtgaaa 4594480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 30 - 219
Target Start/End: Original strand, 4561945 - 4562134
Alignment:
Q  30 aagttcgtcatgattgattgcacaagagggtatatgtcttgagtagcatcaccattgccttccattggagttagaccatctggtatggtctcaaacttaa 129  Q
    |||||||| ||||||||||   |||||| || || ||||||| ||  ||||||||  || ||| ||||||||| |||||||||||| |||||||| ||||    
T  4561945 aagttcgttatgattgattcaccaagagagtgtaggtcttgactaatatcaccatcaccatcctttggagttaaaccatctggtatagtctcaaagttaa 4562044  T
Q  130 agtcactgaaaccatcaagagaatttggacctcttgatttgagcaagcgtttgtgattgtattcggtgttaacaaagg-ttatgtgaaagc 219  Q
    ||||| ||||||||||||  | ||||  |||||||||||| ||||| ||||||||||||||||| ||||||||||||| ||||||||||||    
T  4562045 agtcagtgaaaccatcaaaggcattttcacctcttgattt-agcaaacgtttgtgattgtattcagtgttaacaaaggtttatgtgaaagc 4562134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 30 - 219
Target Start/End: Original strand, 4482148 - 4482337
Alignment:
Q  30 aagttcgtcatgattgattgcacaagagggtatatgtcttgagtagcatcaccattgccttccattggagttagaccatctggtatggtctcaaacttaa 129  Q
    ||||||||||||||||||||   ||||| | ||| ||||||| |  | ||| |||  ||||| |||||||||| |||||||||||| || |||||  |||    
T  4482148 aagttcgtcatgattgattgagtaagagagaataagtcttgacttacttcatcatcaccttcaattggagttaaaccatctggtatcgtttcaaaggtaa 4482247  T
Q  130 agtcactgaaaccatcaagagaatttggacctcttgatttgagcaagcgtttgtgattgtattcggtgttaacaaaggttatgtgaaagc 219  Q
    | ||| ||||||||||||  |  |||||||| |||||||| ||||| ||||||||||||||||||||||| |||||||||||||||||||    
T  4482248 aatcagtgaaaccatcaaaggcttttggaccccttgattttagcaaacgtttgtgattgtattcggtgttgacaaaggttatgtgaaagc 4482337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 62 - 219
Target Start/End: Original strand, 4627465 - 4627622
Alignment:
Q  62 tatgtcttgagtagcatcaccattgccttccattggagttagaccatctggtatggtctcaaacttaaagtcactgaaaccatcaagagaatttggacct 161  Q
    ||||||||||||| |||| ||||  ||||| | ||| |||| |||||||||||||||||||||  |||| |||  |||||||||||  | ||||  ||||    
T  4627465 tatgtcttgagtaacatcgccatcaccttctagtggtgttaaaccatctggtatggtctcaaaggtaaaatcatcgaaaccatcaaaggcattttcacct 4627564  T
Q  162 cttgatttgagcaagcgtttgtgattgtattcggtgttaacaaaggttatgtgaaagc 219  Q
    |||||||||||||| ||||||||||||||||| ||||| |||||||||||||||||||    
T  4627565 cttgatttgagcaaacgtttgtgattgtattcagtgttgacaaaggttatgtgaaagc 4627622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 94 - 217
Target Start/End: Complemental strand, 4488978 - 4488855
Alignment:
Q  94 ttggagttagaccatctggtatggtctcaaacttaaagtcactgaaaccatcaagagaatttggacctcttgatttgagcaagcgtttgtgattgtattc 193  Q
    ||||||||| ||||||||| || ||||||||  |||| ||| | ||||||||||  | ||||||||||||||||||||||||||||||||||||||||||    
T  4488978 ttggagttaaaccatctggaatagtctcaaagctaaaatcagttaaaccatcaaaggcatttggacctcttgatttgagcaagcgtttgtgattgtattc 4488879  T
Q  194 ggtgttaacaaaggttatgtgaaa 217  Q
     ||||| |||||||||||||||||    
T  4488878 agtgttgacaaaggttatgtgaaa 4488855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 76 - 219
Target Start/End: Complemental strand, 4612517 - 4612374
Alignment:
Q  76 catcaccattgccttccattggagttagaccatctggtatggtctcaaacttaaagtcactgaaaccatcaagagaatttggacctcttgatttgagcaa 175  Q
    ||||||||| ||||||  ||| || ||||||||||||||| | ||||||  |||| ||| |||||||| |||  | ||||||||||||||||||||||||    
T  4612517 catcaccatcgccttcgtttgaaggtagaccatctggtatagcctcaaaggtaaaatcagtgaaaccaacaaaggcatttggacctcttgatttgagcaa 4612418  T
Q  176 gcgtttgtgattgtattcggtgttaacaaaggttatgtgaaagc 219  Q
    |||||||||||||||||||||||| || || |||||||||||||    
T  4612417 gcgtttgtgattgtattcggtgttgacgaatgttatgtgaaagc 4612374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 17 - 217
Target Start/End: Original strand, 4462480 - 4462677
Alignment:
Q  17 aaagggttgaaggaagttcgtcatgattgattgcacaagagggtatatgtcttgagtagcatcaccattgccttccattggagttagaccatctggtatg 116  Q
    ||||||||||| ||||||| ||||||||||||| | ||    || || |||||||  | |||||||| |   ||||||||  || | ||||| ||| |||    
T  4462480 aaagggttgaatgaagttcatcatgattgattgaaaaaataagtgtacgtcttgaaaaacatcaccagt---ttccattgttgtaaaaccatttggaatg 4462576  T
Q  117 gtctcaaacttaaagtcactgaaaccatcaagagaatttggacctcttgatttgagcaagcgtttgtgattgtattcggtgttaacaaaggttatgtgaa 216  Q
    |||||||| ||||||||| |||||||||| |||||||| ||||||||||| ||||||||||  |||||||||||||| ||||| ||||||||||||||||    
T  4462577 gtctcaaagttaaagtcagtgaaaccatctagagaattaggacctcttgaattgagcaagcaattgtgattgtattcagtgttgacaaaggttatgtgaa 4462676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 65 - 217
Target Start/End: Complemental strand, 4258986 - 4258834
Alignment:
Q  65 gtcttgagtagcatcaccattgccttccattggagttagaccatctggtatggtctcaaacttaaagtcactgaaaccatcaagagaatttggacctctt 164  Q
    |||||||||| |||| ||||  ||||||| |||||| ||||||||| | || ||||||||  |||| ||| ||||||||||||  | ||||  |||||||    
T  4258986 gtcttgagtaacatcgccatcaccttccactggagtcagaccatcttgaatagtctcaaaggtaaaatcaatgaaaccatcaacggcattttcacctctt 4258887  T
Q  165 gatttgagcaagcgtttgtgattgtattcggtgttaacaaaggttatgtgaaa 217  Q
    ||||||||||| ||||||||||| ||||| ||||| |||||||||||||||||    
T  4258886 gatttgagcaaacgtttgtgattatattcagtgttgacaaaggttatgtgaaa 4258834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 62 - 213
Target Start/End: Original strand, 4599478 - 4599629
Alignment:
Q  62 tatgtcttgagtagcatcaccattgccttccattggagttagaccatctggtatggtctcaaacttaaagtcactgaaaccatcaagagaatttggacct 161  Q
    |||||| || ||| |||||||||  || || |||||||||| ||||||||| || ||||| ||   ||| ||| ||||||||| | ||||||| ||||||    
T  4599478 tatgtcctgtgtaacatcaccatcaccatctattggagttaaaccatctggaatagtctcgaaggaaaaatcagtgaaaccattacgagaattaggacct 4599577  T
Q  162 cttgatttgagcaagcgtttgtgattgtattcggtgttaacaaaggttatgt 213  Q
    ||||||||||||||||||||||||||||| |||||||| || ||||||||||    
T  4599578 cttgatttgagcaagcgtttgtgattgtactcggtgttcacgaaggttatgt 4599629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 53 - 217
Target Start/End: Original strand, 4558431 - 4558595
Alignment:
Q  53 aagagggtatatgtcttgagtagcatcaccattgccttccattggagttagaccatctggtatggtctcaaacttaaagtcactgaaaccatcaagagaa 152  Q
    ||||| ||| ||||||||| || |||| ||||  || ||| ||||||||| |||||| || || ||||||||  |||| ||| ||||||||||||  | |    
T  4558431 aagagcgtaaatgtcttgactaacatcgccatcaccatccgttggagttaaaccatccggaatagtctcaaagctaaaatcagtgaaaccatcaaaggca 4558530  T
Q  153 tttggacctcttgatttgagcaagcgtttgtgattgtattcggtgttaacaaaggttatgtgaaa 217  Q
    |||||||||||||| |||||||| |||||||| |||||||| ||||| ||| |||||||||||||    
T  4558531 tttggacctcttgacttgagcaaccgtttgtggttgtattcagtgtttacataggttatgtgaaa 4558595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 53 - 217
Target Start/End: Original strand, 4586938 - 4587102
Alignment:
Q  53 aagagggtatatgtcttgagtagcatcaccattgccttccattggagttagaccatctggtatggtctcaaacttaaagtcactgaaaccatcaagagaa 152  Q
    ||||| ||| ||||||||| || |||||||||  || ||| ||||||||| ||||||||| || ||||||||  |||| ||| | ||| ||||||  | |    
T  4586938 aagagcgtaaatgtcttgactaacatcaccatcaccatccgttggagttaaaccatctggaatagtctcaaagctaaaatcagttaaatcatcaaaggca 4587037  T
Q  153 tttggacctcttgatttgagcaagcgtttgtgattgtattcggtgttaacaaaggttatgtgaaa 217  Q
    |||||| ||||||| || ||||| ||||||||||||||||| ||||| |||||||||||||||||    
T  4587038 tttggagctcttgacttaagcaaccgtttgtgattgtattcagtgtttacaaaggttatgtgaaa 4587102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 16 - 199
Target Start/End: Complemental strand, 4298357 - 4298174
Alignment:
Q  16 caaagggttgaaggaagttcgtcatgattgattgcacaagagggtatatgtcttgagtagcatcaccattgccttccattggagttagaccatctggtat 115  Q
    ||||||| |||||||||||| |  ||||||||||   |||||    ||||||||||||| |||| ||||  |||||| ||||||| ||||||||||| ||    
T  4298357 caaagggctgaaggaagttctttctgattgattgggaaagagatggtatgtcttgagtaacatctccatcaccttccgttggagtcagaccatctggaat 4298258  T
Q  116 ggtctcaaacttaaagtcactgaaaccatcaagagaatttggacctcttgatttgagcaagcgtttgtgattgtattcggtgtt 199  Q
     ||||||||  ||||||   |||||||||||| ||  |||||||| ||||||| ||||| | ||||||||||||||||||||||    
T  4298257 agtctcaaagctaaagttggtgaaaccatcaaaagcttttggaccccttgattcgagcaggtgtttgtgattgtattcggtgtt 4298174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 53 - 217
Target Start/End: Original strand, 4572272 - 4572436
Alignment:
Q  53 aagagggtatatgtcttgagtagcatcaccattgccttccattggagttagaccatctggtatggtctcaaacttaaagtcactgaaaccatcaagagaa 152  Q
    ||||| ||| ||||||||| || |||| |||| ||| ||| |||||| || ||||||||| ||  ||||||| ||||| |   ||||||||||||  | |    
T  4572272 aagagcgtaaatgtcttgactaacatcgccatcgccatccgttggagataaaccatctggaatactctcaaagttaaaattggtgaaaccatcaaaggca 4572371  T
Q  153 tttggacctcttgatttgagcaagcgtttgtgattgtattcggtgttaacaaaggttatgtgaaa 217  Q
    ||| |||||||||| |||||||| ||||||||||||||||| ||||| ||| |||||||||||||    
T  4572372 ttttgacctcttgacttgagcaaccgtttgtgattgtattcagtgtttacataggttatgtgaaa 4572436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 87 - 217
Target Start/End: Original strand, 4603450 - 4603580
Alignment:
Q  87 ccttccattggagttagaccatctggtatggtctcaaacttaaagtcactgaaaccatcaagagaatttggacctcttgatttgagcaagcgtttgtgat 186  Q
    |||||||| || ||||| |||||||| || || |||||  |||| ||| |||| || || |  | ||| |||||||||||||||||||| ||||||||||    
T  4603450 ccttccatcggtgttagtccatctgggattgtttcaaagctaaaatcagtgaagccgtctaaggcattaggacctcttgatttgagcaaacgtttgtgat 4603549  T
Q  187 tgtattcggtgttaacaaaggttatgtgaaa 217  Q
    ||||||||||||| |||||||||||||||||    
T  4603550 tgtattcggtgttgacaaaggttatgtgaaa 4603580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 66 - 217
Target Start/End: Original strand, 4565348 - 4565499
Alignment:
Q  66 tcttgagtagcatcaccattgccttccattggagttagaccatctggtatggtctcaaacttaaagtcactgaaaccatcaagagaatttggacctcttg 165  Q
    |||||| || |||||||||  ||||| || || |||||||||||||||||||| |||||   |||  ||| | ||||||| |  | ||||||||||||||    
T  4565348 tcttgactaacatcaccatcaccttctatcggtgttagaccatctggtatggtttcaaagcaaaaaccacgggaaccatctaaggcatttggacctcttg 4565447  T
Q  166 atttgagcaagcgtttgtgattgtattcggtgttaacaaaggttatgtgaaa 217  Q
    |||| ||||| ||||| ||||||||||| ||||| ||||||||||| |||||    
T  4565448 attttagcaatcgtttatgattgtattcagtgttgacaaaggttatatgaaa 4565499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 96 - 219
Target Start/End: Original strand, 4569423 - 4569542
Alignment:
Q  96 ggagttagaccatctggtatggtctcaaacttaaagtcactgaaaccatcaagagaatttggacctcttgatttgagcaagcgtttgtgattgtattcgg 195  Q
    ||||||| ||||||||| || ||||||||  |||| ||| ||||||||||||  |  |||||||||||||||||||||||  |||||||||    |||||    
T  4569423 ggagttaaaccatctggaatagtctcaaaggtaaaatcagtgaaaccatcaaaggcttttggacctcttgatttgagcaaatgtttgtgat----ttcgg 4569518  T
Q  196 tgttaacaaaggttatgtgaaagc 219  Q
    |||| |||||||||||||||||||    
T  4569519 tgttgacaaaggttatgtgaaagc 4569542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 153 - 206
Target Start/End: Complemental strand, 4255531 - 4255478
Alignment:
Q  153 tttggacctcttgatttgagcaagcgtttgtgattgtattcggtgttaacaaag 206  Q
    |||||||||||||||| |||||||||||||||||||||||||||||| ||||||    
T  4255531 tttggacctcttgattcgagcaagcgtttgtgattgtattcggtgttgacaaag 4255478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #29
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 157 - 192
Target Start/End: Complemental strand, 4483569 - 4483534
Alignment:
Q  157 gacctcttgatttgagcaagcgtttgtgattgtatt 192  Q
    ||||||||||||||||||| ||||||||||||||||    
T  4483569 gacctcttgatttgagcaaacgtttgtgattgtatt 4483534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 168; Significance: 4e-90; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 16 - 219
Target Start/End: Original strand, 24104364 - 24104567
Alignment:
Q  16 caaagggttgaaggaagttcgtcatgattgattgcacaagagggtatatgtcttgagtagcatcaccattgccttccattggagttagaccatctggtat 115  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  24104364 caaagggctgaaggaagttcgtcatgattgattgcacaagagggtatatgtcttgagtaacatcaccattgccttccattggagttagaccatctggtat 24104463  T
Q  116 ggtctcaaacttaaagtcactgaaaccatcaagagaatttggacctcttgatttgagcaagcgtttgtgattgtattcggtgttaacaaaggttatgtga 215  Q
    ||||||||| ||||||||| ||||||||||||||||||| ||| ||||||||| |||||||||||||||||||||||||||||| || ||||||||||||    
T  24104464 ggtctcaaagttaaagtcattgaaaccatcaagagaattaggatctcttgattcgagcaagcgtttgtgattgtattcggtgttcacgaaggttatgtga 24104563  T
Q  216 aagc 219  Q
    ||||    
T  24104564 aagc 24104567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 147 - 208
Target Start/End: Original strand, 26903609 - 26903670
Alignment:
Q  147 agagaatttggacctcttgatttgagcaagcgtttgtgattgtattcggtgttaacaaaggt 208  Q
    |||||||| |||||||| | ||| || |  ||||||||||||||||| ||||||||||||||    
T  26903609 agagaattaggacctctagctttaagaagacgtttgtgattgtattcagtgttaacaaaggt 26903670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 83; Significance: 2e-39; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 65 - 219
Target Start/End: Original strand, 3088063 - 3088217
Alignment:
Q  65 gtcttgagtagcatcaccattgccttccattggagttagaccatctggtatggtctcaaacttaaagtcactgaaaccatcaagagaatttggacctctt 164  Q
    ||||||| || |||||||||| |||||||||||||||||||||||| | || ||||||||   ||| ||| ||||||||||||||||||| | |||||||    
T  3088063 gtcttgactaacatcaccattaccttccattggagttagaccatcttggatagtctcaaagacaaaatcagtgaaaccatcaagagaattagaacctctt 3088162  T
Q  165 gatttgagcaagcgtttgtgattgtattcggtgttaacaaaggttatgtgaaagc 219  Q
    ||||| ||||| || ||||||||||||||||| || |||||||||||||||||||    
T  3088163 gatttaagcaaacggttgtgattgtattcggtattgacaaaggttatgtgaaagc 3088217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 73; Significance: 2e-33; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 99 - 219
Target Start/End: Original strand, 1282785 - 1282905
Alignment:
Q  99 gttagaccatctggtatggtctcaaacttaaagtcactgaaaccatcaagagaatttggacctcttgatttgagcaagcgtttgtgattgtattcggtgt 198  Q
    |||||||||||||| ||||| |||||  |||| ||| |||||||||| || | |||||||||||||||||||||||||||||||||||||||||| || |    
T  1282785 gttagaccatctgggatggtttcaaagctaaaatcagtgaaaccatctagggcatttggacctcttgatttgagcaagcgtttgtgattgtattcagtat 1282884  T
Q  199 taacaaaggttatgtgaaagc 219  Q
    ||||||||||||||| |||||    
T  1282885 taacaaaggttatgtaaaagc 1282905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0475 (Bit Score: 64; Significance: 4e-28; HSPs: 1)
Name: scaffold0475
Description:

Target: scaffold0475; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 88 - 219
Target Start/End: Original strand, 2165 - 2296
Alignment:
Q  88 cttccattggagttagaccatctggtatggtctcaaacttaaagtcactgaaaccatcaagagaatttggacctcttgatttgagcaagcgtttgtgatt 187  Q
    |||||| |||||||| |||||| || || ||||| ||   ||| |||  |||||||||||||| ||| |||||||||||||||||||||||||| |||||    
T  2165 cttccactggagttaaaccatcgggaatagtctcgaagcaaaaatcagcgaaaccatcaagagcattaggacctcttgatttgagcaagcgtttatgatt 2264  T
Q  188 gtattcggtgttaacaaaggttatgtgaaagc 219  Q
    |||||| ||||| |||||||||||||||||||    
T  2265 gtattcagtgttgacaaaggttatgtgaaagc 2296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0288 (Bit Score: 64; Significance: 4e-28; HSPs: 1)
Name: scaffold0288
Description:

Target: scaffold0288; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 88 - 219
Target Start/End: Complemental strand, 2238 - 2107
Alignment:
Q  88 cttccattggagttagaccatctggtatggtctcaaacttaaagtcactgaaaccatcaagagaatttggacctcttgatttgagcaagcgtttgtgatt 187  Q
    |||||| |||||||| |||||| || || ||||| ||   ||| |||  |||||||||||||| ||| |||||||||||||||||||||||||| |||||    
T  2238 cttccactggagttaaaccatcgggaatagtctcgaagcaaaaatcagcgaaaccatcaagagcattaggacctcttgatttgagcaagcgtttatgatt 2139  T
Q  188 gtattcggtgttaacaaaggttatgtgaaagc 219  Q
    |||||| ||||| |||||||||||||||||||    
T  2138 gtattcagtgttgacaaaggttatgtgaaagc 2107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0199 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: scaffold0199
Description:

Target: scaffold0199; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 76 - 210
Target Start/End: Original strand, 1087 - 1221
Alignment:
Q  76 catcaccattgccttccattggagttagaccatctggtatggtctcaaacttaaagtcactgaaaccatcaagagaatttggacctcttgatttgagcaa 175  Q
    |||||||||  ||||| | ||| |||||||||||||| ||||| |||||  |||| ||| |||||||||| |  | | ||||||||||||||||||||||    
T  1087 catcaccatcaccttctagtggtgttagaccatctgggatggtttcaaagctaaaatcagtgaaaccatccaaggcagttggacctcttgatttgagcaa 1186  T
Q  176 gcgtttgtgattgtattcggtgttaacaaaggtta 210  Q
     ||||||||||||||||| ||||| ||| ||||||    
T  1187 acgtttgtgattgtattcagtgttgacataggtta 1221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 55; Significance: 1e-22; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 76 - 210
Target Start/End: Original strand, 1675850 - 1675984
Alignment:
Q  76 catcaccattgccttccattggagttagaccatctggtatggtctcaaacttaaagtcactgaaaccatcaagagaatttggacctcttgatttgagcaa 175  Q
    |||||||||  ||||| | ||| |||||||||||||| ||||| |||||  |||| ||| |||||||||| |  | | ||||||||||||||||||||||    
T  1675850 catcaccatcaccttctagtggtgttagaccatctgggatggtttcaaagctaaaatcagtgaaaccatccaaggcagttggacctcttgatttgagcaa 1675949  T
Q  176 gcgtttgtgattgtattcggtgttaacaaaggtta 210  Q
     ||||||||||||||||| ||||| ||| ||||||    
T  1675950 acgtttgtgattgtattcagtgttgacataggtta 1675984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 104 - 219
Target Start/End: Complemental strand, 20862581 - 20862466
Alignment:
Q  104 accatctggtatggtctcaaacttaaagtcactgaaaccatcaagagaatttggacctcttgatttgagcaagcgtttgtgattgtattcggtgttaaca 203  Q
    ||||||||| | |||||||||   ||||||| ||||||||||||  |   |||||||  |||| || ||||||||||||||||||||||| || || |||    
T  20862581 accatctggaacggtctcaaagcgaaagtcagtgaaaccatcaaagggtattggacccattgacttaagcaagcgtttgtgattgtattcagtattgaca 20862482  T
Q  204 aaggttatgtgaaagc 219  Q
    || ||||||| |||||    
T  20862481 aatgttatgtaaaagc 20862466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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