View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14337_high_3 (Length: 492)
Name: NF14337_high_3
Description: NF14337
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14337_high_3 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 414; Significance: 0; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 414; E-Value: 0
Query Start/End: Original strand, 16 - 472
Target Start/End: Complemental strand, 1289509 - 1289052
Alignment:
| Q |
16 |
gttcaaacaaaaatttcgttttgcttgtatactaatttggtgcaaagtgtcttgcacttgaaaaagacattattattttttgacaaatggaaaggcataa |
115 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1289509 |
gttcaaacaaatatttcgttttgcttgtatactaatttggtgcaaagtgtcttgcacttgaaaaagacattattattttttgacaaatggaaaggcataa |
1289410 |
T |
|
| Q |
116 |
ttatgaaaataacgtttcactgtattattatcaacaacaaaaaacgcgttttactttgtgaaagttgtggtttataagatgggaagaaacagttgttgga |
215 |
Q |
| |
|
||||||||||||||||| |||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1289409 |
ttatgaaaataacgttttactgtattattatcaagaacaaaaaaaacgttttactttgtgaaagttgtggtttataagatgggaagaaacagttgttgga |
1289310 |
T |
|
| Q |
216 |
aaataaatggctatggctctttagggtaatggaaagtctcaaccaatagcaatgtgatataaattttaggttatattcttgtgtatatgtgtgatacatc |
315 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1289309 |
aaataaatggctatggctttttagggtaatggaaagtctcaaccaatagcaatgtgatataaattttaggttatattcttgtgtatatgtgtgatacatc |
1289210 |
T |
|
| Q |
316 |
taccataatatgtaacgctacatattgtttctagatttgattactacagtacgtttaaattaattggattgacattagtggatgg-ggggtacgtacttt |
414 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||| |||||||||||||| |
|
|
| T |
1289209 |
taccataatatgtaacgctacatattgtttctagatttgattactacagtacgtttaaattaattggatggacattggtggatgggggggtacgtacttt |
1289110 |
T |
|
| Q |
415 |
gaatatctatatgatgaaacaactattggcactggtggataagtttctataaacttaa |
472 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
1289109 |
gaatatctatatgatgaaacaactgttggcactggtggataagtttctataaacttaa |
1289052 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 169 - 398
Target Start/End: Complemental strand, 1302274 - 1302053
Alignment:
| Q |
169 |
ctttgtgaaagttgtggtttataagatgggaagaaacagttgttggaaaataaatggctatggctctttag----ggtaatggaaagtctcaaccaatag |
264 |
Q |
| |
|
|||||||||| | |||||| |||||||||||||||| |||||| ||||||||| ||||||| || ||||| | |||||||||||||||| |||||| |
|
|
| T |
1302274 |
ctttgtgaaaatcatggtttgtaagatgggaagaaacggttgttagaaaataaacggctatgcctttttagttaggataatggaaagtctcaatcaatag |
1302175 |
T |
|
| Q |
265 |
caatgtgatataaattttaggttatattcttgtgtatatgtgtgatacatctaccataatatgtaacgctacatattgtttctagatttgattactacag |
364 |
Q |
| |
|
|||| ||||||| ||||||||||||||||||||||||||||||||||||| || ||| |||||||||||||||||||||||| | ||||| |
|
|
| T |
1302174 |
caat----------ttttaggc-atattcttgtgtatatgtgtgatacatctaccataatgtggaaccctacatattgtttctagatttgatcattacag |
1302086 |
T |
|
| Q |
365 |
tacgtttaaattaattggattgacattagtggat |
398 |
Q |
| |
|
||| |||| |||||||||| | |||| |||||| |
|
|
| T |
1302085 |
cacg-ttaatttaattggatggccattggtggat |
1302053 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 87 - 145
Target Start/End: Complemental strand, 1290142 - 1290084
Alignment:
| Q |
87 |
attattttttgacaaatggaaaggcataattatgaaaataacgtttcactgtattatta |
145 |
Q |
| |
|
|||||||||||||||||| |||||||| |||||||||||||||||| |||||||||||| |
|
|
| T |
1290142 |
attattttttgacaaatgaaaaggcattattatgaaaataacgttttactgtattatta |
1290084 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University