View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14337_low_11 (Length: 391)

Name: NF14337_low_11
Description: NF14337
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14337_low_11
NF14337_low_11
[»] chr1 (4 HSPs)
chr1 (19-384)||(41532667-41533032)
chr1 (26-81)||(23090357-23090412)
chr1 (34-81)||(37892624-37892671)
chr1 (257-324)||(23090589-23090656)
[»] chr7 (5 HSPs)
chr7 (148-326)||(44583367-44583545)
chr7 (29-78)||(30067233-30067282)
chr7 (28-81)||(44583612-44583665)
chr7 (29-78)||(45136905-45136954)
chr7 (34-81)||(26168111-26168158)
[»] chr6 (3 HSPs)
chr6 (173-327)||(34418167-34418321)
chr6 (34-81)||(25972129-25972176)
chr6 (34-81)||(25976569-25976616)
[»] scaffold0631 (1 HSPs)
scaffold0631 (212-300)||(5659-5747)
[»] chr4 (2 HSPs)
chr4 (26-81)||(29360299-29360354)
chr4 (26-81)||(36896733-36896788)
[»] chr3 (6 HSPs)
chr3 (34-81)||(18255209-18255256)
chr3 (29-78)||(18987329-18987378)
chr3 (24-88)||(53544412-53544476)
chr3 (34-81)||(38656726-38656773)
chr3 (26-75)||(47400191-47400240)
chr3 (38-78)||(924709-924749)
[»] chr2 (2 HSPs)
chr2 (26-81)||(4998573-4998628)
chr2 (26-81)||(5014649-5014704)
[»] chr5 (2 HSPs)
chr5 (208-326)||(7781078-7781196)
chr5 (279-324)||(33445197-33445242)
[»] scaffold0296 (1 HSPs)
scaffold0296 (28-77)||(1879-1928)
[»] chr8 (1 HSPs)
chr8 (23-75)||(8162914-8162966)


Alignment Details
Target: chr1 (Bit Score: 350; Significance: 0; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 350; E-Value: 0
Query Start/End: Original strand, 19 - 384
Target Start/End: Original strand, 41532667 - 41533032
Alignment:
Q  19 taaagtgcgatcaactgcttcgaaacaatgtttatgcatcattggtgcttcatcccaaatgatcaattttcttttggcaatcaaattagctaaataactc 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||| ||||    
T  41532667 taaagtgcgatcaactgcttcgaaacaatgtttatgcatcattggtgcttcatcccaaacgatcaattttgttttggcaatcaaattagctaaatgactc 41532766  T
Q  119 ttttgttttatttcacatgtagagagttgatcaatatttataggaatagcaaaccttgagtgtgcagttcttcctcctggaatgagtagtgcagctatcc 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41532767 ttttgttttatttcacatgtagagagttgatcaatatttataggaatagcaaaccttgagtgtgcagttcttcctcctggaatgagtagtgcagctatcc 41532866  T
Q  219 cacttgaagcaacagttaagacaatttgaccttttgatctcaatgctgctgacatagccctccaaataaaagtcttccctgtgcctccataaccataaag 318  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41532867 cacttgaagcaacagttaagacaatttgaccttttgatctcaatgctgctgacatagccctccaaataaaagtcttccctgtgcctccataaccataaag 41532966  T
Q  319 aaaaaatatgtcgggtttgtttacaaatacccttgacatgattctatcatatacccttctctgctc 384  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  41532967 aaaaaatatgtcgggtttgttttcaaatacccttgacatgattctatcatatacccttctctgctc 41533032  T

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Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 26 - 81
Target Start/End: Original strand, 23090357 - 23090412
Alignment:
Q  26 cgatcaactgcttcgaaacaatgtttatgcatcattggtgcttcatcccaaatgat 81  Q
    ||||||| ||||||||||||||||||||||||||| || ||||||||||| |||||    
T  23090357 cgatcaagtgcttcgaaacaatgtttatgcatcatcggcgcttcatcccatatgat 23090412  T

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Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 34 - 81
Target Start/End: Original strand, 37892624 - 37892671
Alignment:
Q  34 tgcttcgaaacaatgtttatgcatcattggtgcttcatcccaaatgat 81  Q
    |||||||||||||||||||||||||||||| ||||||||||| |||||    
T  37892624 tgcttcgaaacaatgtttatgcatcattggcgcttcatcccatatgat 37892671  T

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Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 257 - 324
Target Start/End: Original strand, 23090589 - 23090656
Alignment:
Q  257 ctcaatgctgctgacatagccctccaaataaaagtcttccctgtgcctccataaccataaagaaaaaa 324  Q
    ||||| || ||||||| ||||||||||||||| |||||||| || || |||||||| || ||||||||    
T  23090589 ctcaaagcagctgacaaagccctccaaataaatgtcttccccgtaccaccataaccgtacagaaaaaa 23090656  T

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Target: chr7 (Bit Score: 59; Significance: 7e-25; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 148 - 326
Target Start/End: Complemental strand, 44583545 - 44583367
Alignment:
Q  148 atcaatatttataggaatagcaaaccttgagtgtgcagttcttcctcctggaatgagtagtgcagctatcccacttgaagcaacagttaagacaatttga 247  Q
    ||||| || ||||||||| | ||||||||| ||||||||||||||||| ||||| |  |  |||||||| ||||| || ||||| ||||  ||||| |      
T  44583545 atcaacatgtataggaatggaaaaccttgaatgtgcagttcttcctccaggaatcaacaaagcagctattccactggatgcaactgttagaacaatatct 44583446  T
Q  248 ccttttgatctcaatgctgctgacatagccctccaaataaaagtcttccctgtgcctccataaccataaagaaaaaata 326  Q
    |||||||| |  ||||| ||||||||||||||||||||| ||||||| |||||||| || || |||| |||||||||||    
T  44583445 ccttttgagcgtaatgcagctgacatagccctccaaatataagtctttcctgtgcccccgtagccatgaagaaaaaata 44583367  T

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Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 29 - 78
Target Start/End: Complemental strand, 30067282 - 30067233
Alignment:
Q  29 tcaactgcttcgaaacaatgtttatgcatcattggtgcttcatcccaaat 78  Q
    |||| |||||| ||||| ||||||||||||||||| ||||||||||||||    
T  30067282 tcaagtgcttcaaaacagtgtttatgcatcattggcgcttcatcccaaat 30067233  T

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Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 28 - 81
Target Start/End: Complemental strand, 44583665 - 44583612
Alignment:
Q  28 atcaactgcttcgaaacaatgtttatgcatcattggtgcttcatcccaaatgat 81  Q
    |||||||||||| ||||||||||||||  ||||||| || ||||||||||||||    
T  44583665 atcaactgcttcaaaacaatgtttatgggtcattggagcctcatcccaaatgat 44583612  T

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Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 29 - 78
Target Start/End: Complemental strand, 45136954 - 45136905
Alignment:
Q  29 tcaactgcttcgaaacaatgtttatgcatcattggtgcttcatcccaaat 78  Q
    |||| |||||| ||||| ||||||||||||||||| ||||||||||||||    
T  45136954 tcaagtgcttcaaaacagtgtttatgcatcattggcgcttcatcccaaat 45136905  T

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Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 34 - 81
Target Start/End: Complemental strand, 26168158 - 26168111
Alignment:
Q  34 tgcttcgaaacaatgtttatgcatcattggtgcttcatcccaaatgat 81  Q
    ||||||||||||||| || ||||||||||| ||||||||||| |||||    
T  26168158 tgcttcgaaacaatgcttgtgcatcattggcgcttcatcccatatgat 26168111  T

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Target: chr6 (Bit Score: 59; Significance: 7e-25; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 173 - 327
Target Start/End: Original strand, 34418167 - 34418321
Alignment:
Q  173 cttgagtgtgcagttcttcctcctggaatgagtagtgcagctatcccacttgaagcaacagttaagacaatttgaccttttgatctcaatgctgctgaca 272  Q
    ||||| ||||| ||||| ||||| || |||||||  |||||||| ||||| || |||||  |||| ||||| | ||||| |||||||||||| |||| ||    
T  34418167 cttgaatgtgcggttctgcctccaggtatgagtaacgcagctatgccactggatgcaactattaaaacaatctcaccttgtgatctcaatgcagctgcca 34418266  T
Q  273 tagccctccaaataaaagtcttccctgtgcctccataaccataaagaaaaaatat 327  Q
    |||||||||| | ||| || ||||||||||| || ||||||||||||||||||||    
T  34418267 tagccctccataaaaatgttttccctgtgccaccgtaaccataaagaaaaaatat 34418321  T

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Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 34 - 81
Target Start/End: Original strand, 25972129 - 25972176
Alignment:
Q  34 tgcttcgaaacaatgtttatgcatcattggtgcttcatcccaaatgat 81  Q
    |||||| ||||||||||| ||||||||||| ||||||||||| |||||    
T  25972129 tgcttctaaacaatgtttgtgcatcattggcgcttcatcccatatgat 25972176  T

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Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 34 - 81
Target Start/End: Original strand, 25976569 - 25976616
Alignment:
Q  34 tgcttcgaaacaatgtttatgcatcattggtgcttcatcccaaatgat 81  Q
    |||||| ||||||||||| ||||||||||| ||||||||||| |||||    
T  25976569 tgcttctaaacaatgtttgtgcatcattggcgcttcatcccatatgat 25976616  T

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Target: scaffold0631 (Bit Score: 37; Significance: 0.000000000009; HSPs: 1)
Name: scaffold0631
Description:

Target: scaffold0631; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 212 - 300
Target Start/End: Original strand, 5659 - 5747
Alignment:
Q  212 gctatcccacttgaagcaacagttaagacaatttgaccttttgatctcaatgctgctgacatagccctccaaataaaagtcttccctgt 300  Q
    ||||| |||||||| || || ||||  |||||||| ||||| ||||||||||| | ||||||||| |||||||||||||| || |||||    
T  5659 gctataccacttgacgctactgttagaacaatttgtcctttggatctcaatgcagatgacatagctctccaaataaaagtttttcctgt 5747  T

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Target: chr4 (Bit Score: 36; Significance: 0.00000000004; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 26 - 81
Target Start/End: Original strand, 29360299 - 29360354
Alignment:
Q  26 cgatcaactgcttcgaaacaatgtttatgcatcattggtgcttcatcccaaatgat 81  Q
    ||||||| ||||||||||||||| || ||||||||||| ||||||||||| |||||    
T  29360299 cgatcaagtgcttcgaaacaatgcttgtgcatcattggcgcttcatcccatatgat 29360354  T

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Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 26 - 81
Target Start/End: Original strand, 36896733 - 36896788
Alignment:
Q  26 cgatcaactgcttcgaaacaatgtttatgcatcattggtgcttcatcccaaatgat 81  Q
    |||||||  |||||||||||||||||||||||||| || ||||||||||| |||||    
T  36896733 cgatcaagggcttcgaaacaatgtttatgcatcatcggcgcttcatcccatatgat 36896788  T

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Target: chr3 (Bit Score: 36; Significance: 0.00000000004; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 34 - 81
Target Start/End: Complemental strand, 18255256 - 18255209
Alignment:
Q  34 tgcttcgaaacaatgtttatgcatcattggtgcttcatcccaaatgat 81  Q
    |||||||||||||||||| ||||||||||| ||||||||||| |||||    
T  18255256 tgcttcgaaacaatgtttgtgcatcattggcgcttcatcccatatgat 18255209  T

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Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 29 - 78
Target Start/End: Original strand, 18987329 - 18987378
Alignment:
Q  29 tcaactgcttcgaaacaatgtttatgcatcattggtgcttcatcccaaat 78  Q
    |||| |||||| ||||| ||||||||||||||||| ||||||||||||||    
T  18987329 tcaagtgcttcaaaacagtgtttatgcatcattggcgcttcatcccaaat 18987378  T

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Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 24 - 88
Target Start/End: Complemental strand, 53544476 - 53544412
Alignment:
Q  24 tgcgatcaactgcttcgaaacaatgtttatgcatcattggtgcttcatcccaaatgatcaatttt 88  Q
    ||||||| | |||||| ||||| |||||||||||||| |||||||||||||| || |||| ||||    
T  53544476 tgcgatctagtgcttcaaaacagtgtttatgcatcataggtgcttcatcccatataatcagtttt 53544412  T

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Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 34 - 81
Target Start/End: Original strand, 38656726 - 38656773
Alignment:
Q  34 tgcttcgaaacaatgtttatgcatcattggtgcttcatcccaaatgat 81  Q
    ||||||||||||||| || ||||||||||| ||||||||||| |||||    
T  38656726 tgcttcgaaacaatgcttgtgcatcattggcgcttcatcccatatgat 38656773  T

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Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 26 - 75
Target Start/End: Original strand, 47400191 - 47400240
Alignment:
Q  26 cgatcaactgcttcgaaacaatgtttatgcatcattggtgcttcatccca 75  Q
    ||||||||||| || ||||||||| | |||||||| ||||||||||||||    
T  47400191 cgatcaactgcctcaaaacaatgtatgtgcatcatcggtgcttcatccca 47400240  T

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Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 38 - 78
Target Start/End: Complemental strand, 924749 - 924709
Alignment:
Q  38 tcgaaacaatgtttatgcatcattggtgcttcatcccaaat 78  Q
    ||||| ||||||||||||||||| |||||||| ||||||||    
T  924749 tcgaagcaatgtttatgcatcataggtgcttcgtcccaaat 924709  T

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Target: chr2 (Bit Score: 36; Significance: 0.00000000004; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 26 - 81
Target Start/End: Original strand, 4998573 - 4998628
Alignment:
Q  26 cgatcaactgcttcgaaacaatgtttatgcatcattggtgcttcatcccaaatgat 81  Q
    ||||||| ||||||||||||||| || ||||||||||| ||||||||||| |||||    
T  4998573 cgatcaagtgcttcgaaacaatgcttgtgcatcattggcgcttcatcccatatgat 4998628  T

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Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 26 - 81
Target Start/End: Original strand, 5014649 - 5014704
Alignment:
Q  26 cgatcaactgcttcgaaacaatgtttatgcatcattggtgcttcatcccaaatgat 81  Q
    ||||||| ||||||||||||||| || ||||||||||| ||||||||||| |||||    
T  5014649 cgatcaagtgcttcgaaacaatgcttgtgcatcattggcgcttcatcccatatgat 5014704  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 208 - 326
Target Start/End: Complemental strand, 7781196 - 7781078
Alignment:
Q  208 tgcagctatcccacttgaagcaacagttaagacaatttgaccttttgatctcaatgctgctgacatagccctccaaataaaagtcttccctgtgcctcca 307  Q
    ||||||||| |||||||||||||| ||||| || |||| |||| ||||||  |  || || ||||| || ||||||| ||| ||||| ||||| || ||     
T  7781196 tgcagctataccacttgaagcaactgttaaaactatttcacctcttgatcgtatcgcagccgacattgctctccaaagaaacgtcttgcctgttccgccg 7781097  T
Q  308 taaccataaagaaaaaata 326  Q
    || ||||| ||||||||||    
T  7781096 tatccatatagaaaaaata 7781078  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 279 - 324
Target Start/End: Complemental strand, 33445242 - 33445197
Alignment:
Q  279 tccaaataaaagtcttccctgtgcctccataaccataaagaaaaaa 324  Q
    |||||| | ||||||||||||| |||||||||||||||| ||||||    
T  33445242 tccaaagataagtcttccctgttcctccataaccataaacaaaaaa 33445197  T

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Target: scaffold0296 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0296
Description:

Target: scaffold0296; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 28 - 77
Target Start/End: Original strand, 1879 - 1928
Alignment:
Q  28 atcaactgcttcgaaacaatgtttatgcatcattggtgcttcatcccaaa 77  Q
    |||||||||||| ||||||||||||||  ||||||| || ||||||||||    
T  1879 atcaactgcttcaaaacaatgtttatgggtcattggagcctcatcccaaa 1928  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 23 - 75
Target Start/End: Complemental strand, 8162966 - 8162914
Alignment:
Q  23 gtgcgatcaactgcttcgaaacaatgtttatgcatcattggtgcttcatccca 75  Q
    |||| |||||| ||||| || |||||||| |||||||| ||||||||||||||    
T  8162966 gtgcaatcaacagcttcaaagcaatgtttgtgcatcataggtgcttcatccca 8162914  T

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