View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14337_low_13 (Length: 381)
Name: NF14337_low_13
Description: NF14337
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14337_low_13 |
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Alignment Details
Target: chr3 (Bit Score: 314; Significance: 1e-177; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 5 - 366
Target Start/End: Complemental strand, 3043843 - 3043482
Alignment:
| Q |
5 |
tctagcaggttggtttttaacatttcattacatttgcattttcacttttagatcaataataattcactctatttcatgttctcgtattacttccattttc |
104 |
Q |
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| T |
3043843 |
tctagcaggttggtttttaacatttcattacatttgcattttcacttttagatcaataataattcactctatttcatgttctcgtattacttccattttc |
3043744 |
T |
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| Q |
105 |
aaaattgtaacaattacagtaagctatgattgcttaagcagcataatgcactctataagtgnnnnnnnncttcctataagaatatatcagcattgtgtga |
204 |
Q |
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| T |
3043743 |
aaagttgtaacaattacagtaagctatgattgctttagcagcataatacacactataagtgttttttttcttcctataagaatatatcagcattgtgtga |
3043644 |
T |
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| Q |
205 |
attgaatttgaatgcatgaattcaaattattagtatttttcttcataatacaagaaaataaaaacctaagacttttaatatgttatggttaggataaaca |
304 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
3043643 |
attgaatttgaatgcaggaattcaaattattagtatttttcttcataatacaagaaaataaaaacttaagacttttaatatgttatggttaggataaaca |
3043544 |
T |
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| Q |
305 |
catttaagtttaagaagaatacgaaaattatgctccattttttatggcatgcaactatgtat |
366 |
Q |
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| T |
3043543 |
catttaagtttaagaagaatacgaaaattatgctccattttttatggcatgcaactatgtat |
3043482 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 41 - 81
Target Start/End: Complemental strand, 3015283 - 3015243
Alignment:
| Q |
41 |
cattttcacttttagatcaataataattcactctatttcat |
81 |
Q |
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| T |
3015283 |
cattttcacttttagatcgataataattcactctatttcat |
3015243 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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