View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14337_low_14 (Length: 379)

Name: NF14337_low_14
Description: NF14337
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14337_low_14
NF14337_low_14
[»] chr1 (1 HSPs)
chr1 (6-378)||(30618340-30618710)
[»] chr8 (2 HSPs)
chr8 (249-288)||(9942834-9942873)
chr8 (310-362)||(35620058-35620110)
[»] chr2 (4 HSPs)
chr2 (303-357)||(13486830-13486884)
chr2 (313-363)||(31482372-31482422)
chr2 (254-291)||(13486904-13486941)
chr2 (315-363)||(13133064-13133112)
[»] chr6 (1 HSPs)
chr6 (310-357)||(9606869-9606916)
[»] chr7 (1 HSPs)
chr7 (313-361)||(10293300-10293348)
[»] chr5 (2 HSPs)
chr5 (315-363)||(26498345-26498393)
chr5 (311-355)||(26619406-26619450)
[»] chr4 (2 HSPs)
chr4 (303-363)||(14041283-14041343)
chr4 (313-357)||(35268211-35268255)
[»] chr3 (3 HSPs)
chr3 (315-363)||(8838504-8838552)
chr3 (313-357)||(19432294-19432337)
chr3 (315-363)||(55312440-55312488)


Alignment Details
Target: chr1 (Bit Score: 354; Significance: 0; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 354; E-Value: 0
Query Start/End: Original strand, 6 - 378
Target Start/End: Complemental strand, 30618710 - 30618340
Alignment:
Q  6 aggatttagaataacttaaatacttccctgggcttgaattggcacattcaaaatctggaatttctttgtcagagtaaagatttacaggtttcttctttaa 105  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30618710 aggatttagaataacttaaatacttccctgggcttgaattggcacattcaaaatctggaatttctttgtcagagtaaagatttacaggtttcttctttaa 30618611  T
Q  106 aattgtttgtcatatactgtgataatcaaagtgctcttcacattgttgtcaatcatttgtttcacgaatgtaccaagaaccttgaaattgattgtctcgc 205  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||  ||||    
T  30618610 aattgtctgtcatatactgtgataatcaaagtgctcttcacattgttgtcaatcatttgtttcacgaatgtaccaagaacctagaaattgattg--tcgc 30618513  T
Q  206 attgtgagagaaaaattgcaagccaagttcttgaagctccctccagtctcctccaaagatcaagttgcagactttttcaccaagtctcatacccttaaat 305  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30618512 attgtgagagaaaaattgcaagccaagttcttgaagctccctccagtctcctccaaagatcaagttgcagactttttcaccaagtctcatacccttaaat 30618413  T
Q  306 cttctactatccaagttggggatggttgacatttaccaacctccaacttgtgaggggaaaactgatagaatta 378  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30618412 cttctactatccaagttggggatggttgacatttaccaacctccaacttgtgaggggaaaactgatagaatta 30618340  T

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Target: chr8 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 249 - 288
Target Start/End: Complemental strand, 9942873 - 9942834
Alignment:
Q  249 cagtctcctccaaagatcaagttgcagactttttcaccaa 288  Q
    ||||||| ||||||||||||||||||||||||||||||||    
T  9942873 cagtctcatccaaagatcaagttgcagactttttcaccaa 9942834  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 310 - 362
Target Start/End: Original strand, 35620058 - 35620110
Alignment:
Q  310 tactatccaagttggggatggttgacatttaccaacctccaacttgtgagggg 362  Q
    |||||||||||||||||||| | || || ||||||||| ||||||||| ||||    
T  35620058 tactatccaagttggggatgttagatatctaccaaccttcaacttgtgggggg 35620110  T

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Target: chr2 (Bit Score: 35; Significance: 0.0000000001; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 303 - 357
Target Start/End: Complemental strand, 13486884 - 13486830
Alignment:
Q  303 aatcttctactatccaagttggggatggttgacatttaccaacctccaacttgtg 357  Q
    |||||||| |||||||||||||||||| | || || |||||||||||||||||||    
T  13486884 aatcttcttctatccaagttggggatgttggatatctaccaacctccaacttgtg 13486830  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 313 - 363
Target Start/End: Complemental strand, 31482422 - 31482372
Alignment:
Q  313 tatccaagttggggatggttgacatttaccaacctccaacttgtgagggga 363  Q
    ||||||||||||| || || ||||||||||| ||||||||||||| |||||    
T  31482422 tatccaagttgggtatagtagacatttaccaccctccaacttgtgggggga 31482372  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 254 - 291
Target Start/End: Complemental strand, 13486941 - 13486904
Alignment:
Q  254 tcctccaaagatcaagttgcagactttttcaccaagtc 291  Q
    ||||| |||||||||||||||||||| |||||||||||    
T  13486941 tcctctaaagatcaagttgcagacttcttcaccaagtc 13486904  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 315 - 363
Target Start/End: Original strand, 13133064 - 13133112
Alignment:
Q  315 tccaagttggggatggttgacatttaccaacctccaacttgtgagggga 363  Q
    ||||||||||||||| | ||||| ||||| ||||||||||||| |||||    
T  13133064 tccaagttggggatgttagacatctaccaccctccaacttgtgggggga 13133112  T

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Target: chr6 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 310 - 357
Target Start/End: Complemental strand, 9606916 - 9606869
Alignment:
Q  310 tactatccaagttggggatggttgacatttaccaacctccaacttgtg 357  Q
    |||||||||||||||| ||| ||||||||| ||| |||||||||||||    
T  9606916 tactatccaagttgggaatgattgacatttgccatcctccaacttgtg 9606869  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 313 - 361
Target Start/End: Original strand, 10293300 - 10293348
Alignment:
Q  313 tatccaagttggggatggttgacatttaccaacctccaacttgtgaggg 361  Q
    |||||||||||||| || | || || |||||||||||||||||||||||    
T  10293300 tatccaagttggggttgttggatatataccaacctccaacttgtgaggg 10293348  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000005; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 315 - 363
Target Start/End: Original strand, 26498345 - 26498393
Alignment:
Q  315 tccaagttggggatggttgacatttaccaacctccaacttgtgagggga 363  Q
    ||||||||||||||| | ||||| ||||| ||||||||||||| |||||    
T  26498345 tccaagttggggatgttagacatctaccaccctccaacttgtgggggga 26498393  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 311 - 355
Target Start/End: Complemental strand, 26619450 - 26619406
Alignment:
Q  311 actatccaagttggggatggttgacatttaccaacctccaacttg 355  Q
    |||||||||||||| |||| ||||||| || ||||||||||||||    
T  26619450 actatccaagttggagatgattgacatctatcaacctccaacttg 26619406  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000005; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 303 - 363
Target Start/End: Original strand, 14041283 - 14041343
Alignment:
Q  303 aatcttctactatccaagttggggatggttgacatttaccaacctccaacttgtgagggga 363  Q
    ||||||||||| |||||||||||  || | ||||| |||||||||||| |||||| |||||    
T  14041283 aatcttctactttccaagttgggattgttagacatctaccaacctccatcttgtgggggga 14041343  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 313 - 357
Target Start/End: Complemental strand, 35268255 - 35268211
Alignment:
Q  313 tatccaagttggggatggttgacatttaccaacctccaacttgtg 357  Q
    |||||||||||||  |||| ||||||| |||||||||||||||||    
T  35268255 tatccaagttgggattggtagacatttgccaacctccaacttgtg 35268211  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000005; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 315 - 363
Target Start/End: Original strand, 8838504 - 8838552
Alignment:
Q  315 tccaagttggggatggttgacatttaccaacctccaacttgtgagggga 363  Q
    ||||||||||||||| | || |||||||| ||||||||||||| |||||    
T  8838504 tccaagttggggatgttagatatttaccaccctccaacttgtgggggga 8838552  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 313 - 357
Target Start/End: Original strand, 19432294 - 19432337
Alignment:
Q  313 tatccaagttggggatggttgacatttaccaacctccaacttgtg 357  Q
    |||||||||||||  |||||||||||||||||||| |||||||||    
T  19432294 tatccaagttgggattggttgacatttaccaacct-caacttgtg 19432337  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 315 - 363
Target Start/End: Original strand, 55312440 - 55312488
Alignment:
Q  315 tccaagttggggatggttgacatttaccaacctccaacttgtgagggga 363  Q
    ||||||||||||||| | ||||| ||||| ||||||||||||| |||||    
T  55312440 tccaagttggggatgttagacatctaccaccctccaacttgtgggggga 55312488  T

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