View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14337_low_15 (Length: 378)
Name: NF14337_low_15
Description: NF14337
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14337_low_15 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 229; Significance: 1e-126; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 18 - 361
Target Start/End: Complemental strand, 34449368 - 34449004
Alignment:
| Q |
18 |
tcaccatgattagagcttttacaacctcaaacagttcaacaaacattcttctatcttaatccatagtatatagtcaaatatatttat----------ttc |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
34449368 |
tcaccatgattagagcttttacaacctcaaacagttcaacaaccattcttctatcttaatccatagtatatagtcaaatatatttatatatatttatttc |
34449269 |
T |
|
| Q |
108 |
cttttaaagcagatgaaaatatggttgttatgattaaagatgagatcaacatttatata-ttattaacatatattttatgaaannnnnnnatcgaagaaa |
206 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||| |
|
|
| T |
34449268 |
cttttaaagcagctgaaaatatggttgttatgatttaagatgagatcaacatttatatatttattaacatatattttatgaaatttttttatcgaagaaa |
34449169 |
T |
|
| Q |
207 |
ttggagtgtaataatatatgagcaaatttggcgatttggaagattgtattattattatcaaggttagatatagc---------ttgtctttctattactg |
297 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
34449168 |
ttggagtgtaataatatatgagcaaatttggcgatttggaagattg---tattattatcaaggttagatatagcttacaattattgtctttctattactg |
34449072 |
T |
|
| Q |
298 |
ttattaatttttcatgtataattcatgattttctatggtggtg----ttacacttgttgagtattggt |
361 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
34449071 |
ttattaatttttcatgtataattcatgattttctatggtggtgttaattacacttgttgagtattggt |
34449004 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University