View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14337_low_16 (Length: 361)
Name: NF14337_low_16
Description: NF14337
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14337_low_16 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 202; Significance: 1e-110; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 14 - 361
Target Start/End: Complemental strand, 3237164 - 3236825
Alignment:
| Q |
14 |
attattcttccgtaattaaaattaaaggttatacggtttataaacaacacaaactcctcaatctaacaaacatcttttaccgataatataatgtgaaggt |
113 |
Q |
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| T |
3237164 |
attattcttccgtaattaaaattaaaggttatacggtttattaacagcacaaactcctcaatctaacaaacatcttttaccgataacataatgtgaaggt |
3237065 |
T |
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| Q |
114 |
acaaaatccacaatatctgaaatagacaaatgatttagaacaaagttaacatttgttgnnnnnnnnnnnnnnnnngttttccattcaaaattcaaacgtt |
213 |
Q |
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| T |
3237064 |
acaaaatccacaatatctaaaatagacaaatgattcagaacaaagttaacatttgtt--------caaaaaaaaagttttccattcaaaattcaaacgtt |
3236973 |
T |
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| Q |
214 |
atcatttaccaagacacaaaattcatttcaataatgnnnnnnnattcaacgttactactagtaataaattcacaaccggtcaatgttgaccataagnnnn |
313 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
3236972 |
atcatttaccaagacacaaaattcatttcaataatgtttttttattcaacgttgctactagtaataaattcacaaccggtcaatgttgaccataagtttt |
3236873 |
T |
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| Q |
314 |
nnncatcaataaacgtttcccatgagnnnnnnncttaacattactacc |
361 |
Q |
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| T |
3236872 |
tttcatcaataaacgtttcccatgagtttttttcttaacattactacc |
3236825 |
T |
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