View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14337_low_17 (Length: 344)
Name: NF14337_low_17
Description: NF14337
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14337_low_17 |
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Alignment Details
Target: chr6 (Bit Score: 314; Significance: 1e-177; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 1 - 330
Target Start/End: Original strand, 13849961 - 13850290
Alignment:
| Q |
1 |
cttatgtagaacccatatctaaaatgtgtgggaccctcatgaatttcatgcaataagatagtgaatgttagggagttttggaaagaaaatgttgctagca |
100 |
Q |
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| T |
13849961 |
cttatgtagaacccatatctaaaatgtgtgggaccctcacgaatttcatgcaataagatagtgaatgttagggagttttggaaagaaaatgttgctagca |
13850060 |
T |
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| Q |
101 |
ctcctctttaagaaaatagaggcgatttagggtttcaatttgtatgtgtttgtgttttgatgacattgatatatgaatcactgatgcagacacttgacac |
200 |
Q |
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| T |
13850061 |
ctcctctttaagaaaatagaaccgattttgggtttcaatttgtatgtgtttgtgttttgatgacattgatatatgaatcactgatgcagacacttgacac |
13850160 |
T |
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| Q |
201 |
gagactgacatagtaagatattgatgatgatttaggagaatagaagtggtttagggtaatgtttgttaccgattataaaaaatatattttgtcattttag |
300 |
Q |
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| T |
13850161 |
gagactgacatagtaagatattgatgatgatttaggagaatagaagtggtttagggtaatgtttgttaccgattataaaaaatatattttgtcattttag |
13850260 |
T |
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| Q |
301 |
attaatttttagagatttagggttcctttg |
330 |
Q |
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| T |
13850261 |
attaatttttagagatttagggttcctttg |
13850290 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.000000008; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 23 - 106
Target Start/End: Original strand, 864199 - 864282
Alignment:
| Q |
23 |
aatgtgtgggaccctcatgaatttcatgcaataagatagtgaatgttagggagttttggaaagaaaatgttgctagcactcctc |
106 |
Q |
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| T |
864199 |
aatgtgtggtacccacatgaatttcacccaataagagagtgagtgttagagagtgtttgaaagagagtgttcatagcactcctc |
864282 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 44 - 108
Target Start/End: Complemental strand, 31494267 - 31494203
Alignment:
| Q |
44 |
tttcatgcaataagatagtgaatgttagggagttttggaaagaaaatgttgctagcactcctctt |
108 |
Q |
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|||||| |||||||| ||||| |||||| |||| ||| ||||| | ||||||||||||| ||||| |
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| T |
31494267 |
tttcatccaataagagagtgagtgttagagagtgttgaaaagagagtgttgctagcactactctt |
31494203 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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