View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14337_low_18 (Length: 341)
Name: NF14337_low_18
Description: NF14337
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14337_low_18 |
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| [»] chr8 (2 HSPs) |
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| [»] scaffold0047 (1 HSPs) |
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| [»] scaffold0005 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 237; Significance: 1e-131; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 81 - 341
Target Start/End: Complemental strand, 7418796 - 7418536
Alignment:
| Q |
81 |
acaccatgtgaatgtagactcaagagtcaagagtcaaggtcaatgtaataaactactttgcaaattctaagtcaataaatcaatattgaaatttctgtga |
180 |
Q |
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| T |
7418796 |
acactatgtgaatgtagactcaagagtcaagagtcaaggtcaatggaataaactactttgcaaattctaagtcaataaatcaatattgaaatttctgtga |
7418697 |
T |
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| Q |
181 |
aattgcaatggcaacaatccaagaaacaaaaggcaatgagtcctttttagtttggcaactcgaaattatttttgaaagatcaaaatatacaggtcaattg |
280 |
Q |
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| T |
7418696 |
aattgcaatggcaacaatccaagaaacaataggcagtgagtccattttagtttggcaactcgaaattatttttgaaagatcaaaatatacaggtcaattg |
7418597 |
T |
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| Q |
281 |
tcttccacttactcttcaattattttaggtgggcccacttattcttgttttaacaaataaa |
341 |
Q |
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| T |
7418596 |
tcttccacttactcttcaattattttagatgggcccacttattcttgttttaacaaataaa |
7418536 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 36 - 79
Target Start/End: Complemental strand, 32965960 - 32965917
Alignment:
| Q |
36 |
agtctcctacggtaggagacctattaagattgtctaccgtagcc |
79 |
Q |
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||||||||||||||||||||||| | |||||| ||||||||||| |
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| T |
32965960 |
agtctcctacggtaggagacctaatgagattgcctaccgtagcc |
32965917 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0047 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: scaffold0047
Description:
Target: scaffold0047; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 35 - 92
Target Start/End: Original strand, 31669 - 31726
Alignment:
| Q |
35 |
tagtctcctacggtaggagacctattaagattgtctaccgtagccaacaccatgtgaa |
92 |
Q |
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| T |
31669 |
tagtctcctacggtaggagacctattaaggttgcctaccgtagccaacaccatatgaa |
31726 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0005 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: scaffold0005
Description:
Target: scaffold0005; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 35 - 92
Target Start/End: Complemental strand, 4864 - 4807
Alignment:
| Q |
35 |
tagtctcctacggtaggagacctattaagattgtctaccgtagccaacaccatgtgaa |
92 |
Q |
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| T |
4864 |
tagtctcctacggtaggagacctattaaggttgcctaccgtagccaacaccatatgaa |
4807 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 46; Significance: 3e-17; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 35 - 92
Target Start/End: Original strand, 14834835 - 14834892
Alignment:
| Q |
35 |
tagtctcctacggtaggagacctattaagattgtctaccgtagccaacaccatgtgaa |
92 |
Q |
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| T |
14834835 |
tagtctcctacggtaggagacctattaaggttgcctaccgtagccaacaccatatgaa |
14834892 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 35 - 86
Target Start/End: Complemental strand, 52105720 - 52105669
Alignment:
| Q |
35 |
tagtctcctacggtaggagacctattaagattgtctaccgtagccaacacca |
86 |
Q |
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| T |
52105720 |
tagtctcctacggtaggagacccattaaagttgcctaccgtagtcaacacca |
52105669 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 35 - 85
Target Start/End: Original strand, 6231872 - 6231922
Alignment:
| Q |
35 |
tagtctcctacggtaggagacctattaagattgtctaccgtagccaacacc |
85 |
Q |
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| T |
6231872 |
tagtctcctacgataggagacccattaaggttgtctaccgtagccaacacc |
6231922 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 35 - 85
Target Start/End: Original strand, 41807236 - 41807286
Alignment:
| Q |
35 |
tagtctcctacggtaggagacctattaagattgtctaccgtagccaacacc |
85 |
Q |
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|||||| ||||| ||||||||| |||||| ||| ||||||||||||||||| |
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| T |
41807236 |
tagtcttctacgataggagacccattaaggttgcctaccgtagccaacacc |
41807286 |
T |
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