View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14337_low_2 (Length: 599)
Name: NF14337_low_2
Description: NF14337
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14337_low_2 |
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| [»] chr8 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 268; Significance: 1e-149; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 324 - 599
Target Start/End: Complemental strand, 30018184 - 30017909
Alignment:
| Q |
324 |
agttttgattccatatatgctgctaactcggttttcaaatcaagcaacaaagaggaagatgcttccaatttggatttgagaactcttgctgataaaactt |
423 |
Q |
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| T |
30018184 |
agttttgattccatatatgctgctaactcggttttcaaatcaagcaacaaagaggaagatgcttccaatttggatttgagaactcttgctgataaaactt |
30018085 |
T |
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| Q |
424 |
gttcatttagtgtctctagctccttttctgattgttcaagttcaagcttatagttttgagtttcttcatcgatgatgcccgatgcttgttcctcggctgc |
523 |
Q |
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| T |
30018084 |
gttcatttagtgtctctagctccttttctgattgttcaagttcaagcttatagttttgagtttcttcatcgatgacgcccgatgcttgttcctcggctgc |
30017985 |
T |
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| Q |
524 |
caagtgcgccgtttgagtcaaaatcaatgactcctttgttgcaattaactcagctgttaaatcttccactgctttt |
599 |
Q |
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| T |
30017984 |
caagtgcgccgtttgagtcgaaatcaatgactcctttgttgcaattaactcagctgttaaatcttccactgctttt |
30017909 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 19 - 258
Target Start/End: Complemental strand, 30018489 - 30018250
Alignment:
| Q |
19 |
cttgtgctgctgcttgaagtttcttaggtaactcagccataatctcttttgcttcattctctttcatttgaagaaaagctattgctgattttgatttctc |
118 |
Q |
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| T |
30018489 |
cttgtgctgctgcttgaagtttcttaggtaactcagccataatctcttttgcttcattctctttcatttgaagaaaagctattgctgattttgatttctc |
30018390 |
T |
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| Q |
119 |
aagttcaacttgaagacttgtgactttagcagaagctttttcttcactttctttaaggttgttgagaatcaacttttcttcttttagttctgattgaagc |
218 |
Q |
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| T |
30018389 |
cagttcaacttgaagacttgtgactttagcagaagctttttcttcactttctttaaggttgttgagaatcaacttttcttcttttagttctgattgaagc |
30018290 |
T |
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| Q |
219 |
aatattgaagcttctcttaagctgttaacctcattagttg |
258 |
Q |
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| T |
30018289 |
aatattgaagcttctcttaagctgttaacctcattagttg |
30018250 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 79; Significance: 1e-36; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 164 - 258
Target Start/End: Original strand, 1217689 - 1217783
Alignment:
| Q |
164 |
actttctttaaggttgttgagaatcaacttttcttcttttagttctgattgaagcaatattgaagcttctcttaagctgttaacctcattagttg |
258 |
Q |
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| T |
1217689 |
actttctttaaggttgttgagaattaacatttcttcttctagttctgattgaagcaatattgaagctcctcttaagctgttaacctcattagttg |
1217783 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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