View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14337_low_20 (Length: 329)

Name: NF14337_low_20
Description: NF14337
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14337_low_20
NF14337_low_20
[»] chr3 (5 HSPs)
chr3 (6-317)||(862482-862794)
chr3 (10-131)||(48559096-48559219)
chr3 (190-279)||(4287596-4287686)
chr3 (157-296)||(7720579-7720718)
chr3 (237-285)||(7770830-7770878)
[»] chr7 (11 HSPs)
chr7 (6-302)||(26572516-26572819)
chr7 (6-312)||(984268-984568)
chr7 (62-297)||(29541949-29542185)
chr7 (149-296)||(1780624-1780772)
chr7 (6-216)||(2476578-2476790)
chr7 (180-307)||(16803735-16803863)
chr7 (89-292)||(8876557-8876762)
chr7 (84-302)||(45956738-45956957)
chr7 (9-52)||(12865740-12865783)
chr7 (167-297)||(23103842-23103972)
chr7 (243-308)||(18152143-18152208)
[»] chr2 (5 HSPs)
chr2 (6-312)||(27467093-27467402)
chr2 (98-264)||(17558219-17558386)
chr2 (138-257)||(19321910-19322029)
chr2 (256-316)||(10889081-10889141)
chr2 (200-296)||(9789691-9789788)
[»] chr5 (3 HSPs)
chr5 (6-290)||(17468905-17469192)
chr5 (88-307)||(16511191-16511412)
chr5 (181-228)||(25540803-25540850)
[»] chr4 (13 HSPs)
chr4 (6-312)||(12109762-12110071)
chr4 (138-308)||(4225494-4225665)
chr4 (8-294)||(7354715-7355009)
chr4 (84-312)||(19940738-19940967)
chr4 (85-312)||(10179423-10179651)
chr4 (6-97)||(50688537-50688630)
chr4 (248-312)||(44344331-44344395)
chr4 (243-307)||(21201757-21201821)
chr4 (243-307)||(27258897-27258961)
chr4 (138-226)||(50688637-50688725)
chr4 (248-303)||(35945142-35945197)
chr4 (149-278)||(20570632-20570762)
chr4 (248-285)||(2916334-2916371)
[»] chr1 (13 HSPs)
chr1 (11-308)||(15244299-15244599)
chr1 (6-240)||(19709277-19709508)
chr1 (85-310)||(39440329-39440557)
chr1 (137-308)||(6242798-6242967)
chr1 (88-297)||(21502014-21502222)
chr1 (243-312)||(47900093-47900162)
chr1 (137-296)||(33078950-33079110)
chr1 (13-165)||(47900178-47900331)
chr1 (6-110)||(15731830-15731936)
chr1 (91-208)||(15877893-15878010)
chr1 (243-284)||(52973541-52973582)
chr1 (248-296)||(15732093-15732141)
chr1 (184-268)||(1972351-1972435)
[»] chr8 (6 HSPs)
chr8 (6-296)||(19452370-19452657)
chr8 (6-296)||(19528419-19528706)
chr8 (6-267)||(13217730-13217994)
chr8 (85-226)||(30122280-30122420)
chr8 (252-312)||(30117577-30117637)
chr8 (137-296)||(7635312-7635473)
[»] chr6 (1 HSPs)
chr6 (9-296)||(14274758-14275046)
[»] scaffold0316 (1 HSPs)
scaffold0316 (227-283)||(19465-19521)
[»] scaffold0004 (1 HSPs)
scaffold0004 (149-296)||(119771-119915)


Alignment Details
Target: chr3 (Bit Score: 237; Significance: 1e-131; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 6 - 317
Target Start/End: Original strand, 862482 - 862794
Alignment:
Q  6 tagtgatttagagttatga-ttatttgggtgatgcttcaagctcacctttatttcttggattgtaatatatcattagcactattttatctatcaatttag 104  Q
    ||||||||||||||||  | ||||||||||||| |||||| ||||||||| ||||||||||||||||||||  |||||||||||||||||||||||||||    
T  862482 tagtgatttagagttacaaattatttgggtgatacttcaaactcacctttttttcttggattgtaatatattgttagcactattttatctatcaatttag 862581  T
Q  105 cttttcttgattttatttatgttgcatattaccttcatcttcgcggttaaactcatcatgaactaaacctcttcctgtggtttaaacatgatgaagttat 204  Q
    |||||| |||||||||||||||||||||||||||||||||||  ||||||||| ||||||||||||||| |||||||||||||||||||||| || ||||    
T  862582 cttttcatgattttatttatgttgcatattaccttcatcttcttggttaaacttatcatgaactaaaccccttcctgtggtttaaacatgataaaattat 862681  T
Q  205 gatattatttgcttaagatttaaaagctacaacttcgtgcttttttcaaacaaattgttttaactcaaaatctttgaaagtgaaacttgatctattttgc 304  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  862682 gatattctttgcttaagatttaaaagctacaacttcgtgcttttttcaaacaaattgttttaactcaaaatctttaaaagtgaaacttgatctattttgc 862781  T
Q  305 ttttgatgatatt 317  Q
    ||| |||||||||    
T  862782 tttagatgatatt 862794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 10 - 131
Target Start/End: Complemental strand, 48559219 - 48559096
Alignment:
Q  10 gatttagagttatgattatttgggtgatgcttcaagctcac--ctttatttcttggattgtaatatatcattagcactattttatctatcaatttagctt 107  Q
    |||||||||||| |||||||||| |||||||||||||||||  ||||  |||||  |||||||||| | | | || |||||||||||||||||||| |||    
T  48559219 gatttagagttaagattatttggatgatgcttcaagctcacatctttcattcttaaattgtaatatgttagtggctctattttatctatcaatttaactt 48559120  T
Q  108 ttcttgattttatttatgttgcat 131  Q
    ||| || ||| |||||||||||||    
T  48559119 ttcatgttttcatttatgttgcat 48559096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 190 - 279
Target Start/End: Complemental strand, 4287686 - 4287596
Alignment:
Q  190 acatgatgaagttatgatattatttgcttaagattta-aaagctacaacttcgtgcttttttcaaacaaattgttttaactcaaaatcttt 279  Q
    ||||| ||| ||||||||| |||||||||| |||||| |||||||    ||| ||||| ||||||||||| || |||||||||||||||||    
T  4287686 acatggtgaggttatgatactatttgcttacgatttataaagctatgggttcttgcttctttcaaacaaactgatttaactcaaaatcttt 4287596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 157 - 296
Target Start/End: Complemental strand, 7720718 - 7720579
Alignment:
Q  157 tcatcatgaactaaacctcttcctgtggtttaaacatgatgaagttatgatattatttgcttaagatttaaa-agctacaacttcgtgcttttttcaaac 255  Q
    |||||||||  |||||||||| | ||||||||  |||||||| |||||| ||||||||  || |||||| || | ||| |||||| ||||| ||| || |    
T  7720718 tcatcatgagttaaacctctttcggtggtttagtcatgatgaggttatggtattatttaatttagatttgaagaactataacttcatgcttcttttaagc 7720619  T
Q  256 aaattgttttaactcaaaatctttgaaagtgaaacttgatc 296  Q
    ||| ||||||||| | || ||||||||||| || |||||||    
T  7720618 aaactgttttaacactaa-tctttgaaagtaaaccttgatc 7720579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 237 - 285
Target Start/End: Original strand, 7770830 - 7770878
Alignment:
Q  237 cttcgtgcttttttcaaacaaattgttttaactcaaaatctttgaaagt 285  Q
    |||| ||||| |||||||||||||||||| |||||||| | ||||||||    
T  7770830 cttcatgcttctttcaaacaaattgttttgactcaaaacccttgaaagt 7770878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 116; Significance: 5e-59; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 6 - 302
Target Start/End: Complemental strand, 26572819 - 26572516
Alignment:
Q  6 tagtgatttagagttatgattatttgggtgatgcttcaagctcacctttat--ttcttggattgtaatatatcattagcactattttatct----atcaa 99  Q
    |||||||||||||||| |||||||||||||||||||||||||||||| |    ||||||||||| ||||| | | || | ||||||||| |    |||||    
T  26572819 tagtgatttagagttaagattatttgggtgatgcttcaagctcacctcttcccttcttggattgcaatatgttactaactctattttatatctatatcaa 26572720  T
Q  100 tttagcttttcttgattttatttatgttgcatattaccttcatcttcgcggttaaactcatcatgaactaaacctcttcctgtggtttaaacatgatgaa 199  Q
    ||||||||||| || ||| ||||||||||||  | ||||||||||| |  |||||  |||||||||  ||||||  ||| | ||||| | |||||||||     
T  26572719 tttagcttttcatgttttcatttatgttgcagttcaccttcatctttgtagttaagttcatcatgagataaacccgttcttatggttaagacatgatgag 26572620  T
Q  200 gttatgatattatttgcttaagattta-aaagctacaacttcgtgcttttttcaaacaaattgttttaactcaaaatctttgaaagtgaaacttgatcta 298  Q
    ||||||||| | ||||||||||||||| |||| ||||||||||||||| ||||||||||| |||||||||||||||||||| |||||||||||| |||||    
T  26572619 gttatgatagtttttgcttaagatttataaagatacaacttcgtgcttctttcaaacaaaatgttttaactcaaaatctttaaaagtgaaacttaatcta 26572520  T
Q  299 tttt 302  Q
    ||||    
T  26572519 tttt 26572516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 6 - 312
Target Start/End: Original strand, 984268 - 984568
Alignment:
Q  6 tagtgatttagagttatgattatttgggtgatgcttcaagctcacc--tttatttcttggattgtaatatatcattagcactattttatctatcaattta 103  Q
    |||||||||| ||||| |||||||| |||||||||||||  |||||  |||  ||||||||||||||| | | || | |  |||||||||||||||||||    
T  984268 tagtgatttaaagttaggattatttaggtgatgcttcaat-tcacccatttccttcttggattgtaatcttttatgaactatattttatctatcaattta 984366  T
Q  104 gcttttcttgattttatttatgttgcatattaccttcatcttcgcggttaaactcatcatgaactaaacctcttcctgtggtttaaacatgatgaagtta 203  Q
    | ||||| || ||| |||||||||||||      |||||||||  || || | |||||  || |||||||  |||  |||||||| ||||||||| ||||    
T  984367 gtttttcatgttttcatttatgttgcat------ttcatcttcatggctatattcatc--gagctaaaccctttctcgtggtttagacatgatgaggtta 984458  T
Q  204 tgatattatttgcttaagattta-aaagctacaacttcgtgcttttttcaaacaaattgttttaactcaaaatctttgaaagtgaaacttgatctatttt 302  Q
    ||||||| |||| |||||||||| ||||||| |||||||||||| ||| ||||||||  ||||||||||||||||||| ||||||||||  |||| ||||    
T  984459 tgatattctttgtttaagatttataaagctataacttcgtgcttcttttaaacaaatgattttaactcaaaatctttgtaagtgaaactcaatctctttt 984558  T
Q  303 gcttttgatg 312  Q
     |||||||||    
T  984559 acttttgatg 984568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 62 - 297
Target Start/End: Complemental strand, 29542185 - 29541949
Alignment:
Q  62 ggattgtaatatatcattagcactattttatctatcaatttagcttttcttgattttatttatgttgcatattaccttcatcttcgcggttaaactcatc 161  Q
    ||||||||||||   | |||| ||||||||||||||||||||  ||||| || ||| || |||||| ||| | | ||||||||  | |||| ||||||||    
T  29542185 ggattgtaatatcgtactagctctattttatctatcaatttaatttttcatgttttcatctatgtttcatttcatcttcatctctgaggttcaactcatc 29542086  T
Q  162 atgaactaaacctcttcctgtggtttaaacatgatgaagttatgatattatttgcttaagattta-aaagctacaacttcgtgcttttttcaaacaaatt 260  Q
    |||| |||||||||||| ||||||||| ||||||||| ||||||||||| | | ||||||||||| |||||||   ||||   ||| ||||||||||| |    
T  29542085 atgagctaaacctcttcttgtggtttagacatgatgaggttatgatattctattcttaagatttataaagctatggcttcacacttctttcaaacaaact 29541986  T
Q  261 gttttaactcaaaatctttgaaagtgaaacttgatct 297  Q
    ||||||||||||||||||| ||||| |||||||||||    
T  29541985 gttttaactcaaaatctttaaaagtaaaacttgatct 29541949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 149 - 296
Target Start/End: Complemental strand, 1780772 - 1780624
Alignment:
Q  149 ggttaaactcatcatgaactaaacctcttcctgtggtttaaacatgatgaagttatgatattatttgcttaagatttaaa-agctacaacttcgtgcttt 247  Q
    |||||| |||||||||| ||||||| |||| ||||||||| |||||||||||||||||| || ||||||||||||| ||| ||||| ||||||||   |     
T  1780772 ggttaatctcatcatgacctaaaccccttcttgtggtttagacatgatgaagttatgatgttctttgcttaagattgaaagagctataacttcgtatctc 1780673  T
Q  248 tttcaaacaaattgttttaactcaaaatctttgaaagtgaaacttgatc 296  Q
    ||||||||||||| ||||||   ||||||| ||||||| ||||||||||    
T  1780672 tttcaaacaaattattttaatgaaaaatctctgaaagtaaaacttgatc 1780624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 6 - 216
Target Start/End: Complemental strand, 2476790 - 2476578
Alignment:
Q  6 tagtgatttagagttatgattatttgggtgatgcttcaagctcacctttat--ttcttggattgtaatatatcattagcactattttatctatcaattta 103  Q
    |||||||||||||| | ||||| |||||||||||||||||||||||| | |  ||||| || |||||| | | | ||||  ||||||| |||| ||||||    
T  2476790 tagtgatttagagtcaggattacttgggtgatgcttcaagctcacctatttccttcttagactgtaatctgttactagctatattttagctattaattta 2476691  T
Q  104 gcttttcttgattttatttatgttgcatattaccttcatcttcgcggttaaactcatcatgaactaaacctcttcctgtggtttaaacatgatgaagtta 203  Q
    | ||||| || ||| | ||||||||||  | |||| |||||| | |||||| |||||||||| ||||||| |||||| ||||||| | |||| || ||||    
T  2476690 gtttttcatgttttaacttatgttgcacttcacctccatctttgtggttaagctcatcatgagctaaaccccttcctctggtttagatatgacgaggtta 2476591  T
Q  204 tgatattatttgc 216  Q
    ||||||| |||||    
T  2476590 tgatattctttgc 2476578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 180 - 307
Target Start/End: Original strand, 16803735 - 16803863
Alignment:
Q  180 tgtggtttaaacatgatgaagttatgatattatttgcttaagattta-aaagctacaacttcgtgcttttttcaaacaaattgttttaactcaaaatctt 278  Q
    ||||||||| |||||  || ||||||||||| || |||||||||||| ||||||| | ||||| |||| ||||||||||| ||  |||||||||||||||    
T  16803735 tgtggtttagacatggcgaggttatgatattcttcgcttaagatttataaagctatagcttcgcgcttctttcaaacaaactgaattaactcaaaatctt 16803834  T
Q  279 tgaaagtgaaacttgatctattttgcttt 307  Q
    ||||||| ||||||||||| |||| ||||    
T  16803835 tgaaagtaaaacttgatctcttttacttt 16803863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 89 - 292
Target Start/End: Original strand, 8876557 - 8876762
Alignment:
Q  89 ttatctatcaatttagctttt-cttgattttatttatgttgcatattaccttcatcttcgcggttaaactcatcatgaactaaacctcttcctgtggttt 187  Q
    |||| ||||||||||| |||| | || ||| ||||||||| ||| | | ||||||||||| |||||| ||||||||||  ||||||  ||  |||||| |    
T  8876557 ttatatatcaatttagttttttcatgttttcatttatgtttcatttcatcttcatcttcgtggttaagctcatcatgagataaaccctttattgtggtat 8876656  T
Q  188 aaacatgatgaagttatgatattatttgcttaagatttaaa-agctacaacttcgtgcttttttcaaacaaattgttttaactcaaaatctttgaaagtg 286  Q
    | | ||||||| ||||| ||||| || ||||||||||||||  |||| |||||||||||| ||||||||||| | ||||||  | ||| ||||| ||||     
T  8876657 agaaatgatgaggttatcatattcttcgcttaagatttaaagggctataacttcgtgcttctttcaaacaaactattttaatgccaaacctttggaagta 8876756  T
Q  287 aaactt 292  Q
    ||||||    
T  8876757 aaactt 8876762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 84 - 302
Target Start/End: Original strand, 45956738 - 45956957
Alignment:
Q  84 ctattttatctatcaatttagcttttcttgattttatttatgttgcatattaccttcatcttcgcggttaaactcatcatgaactaaacctcttcctgtg 183  Q
    |||||| |||||||||||||||||||| || |||||||||||||     | ||| ||||||  | |||| ||||||  || | ||||||| |||| ||||    
T  45956738 ctatttaatctatcaatttagcttttcatgtttttatttatgttttccttcaccctcatctctgaggttcaactcactataagctaaaccccttcttgtg 45956837  T
Q  184 gtttaaacatgatgaagttatgatattatttgcttaagattta-aaagctacaacttcgtgcttttttcaaacaaattgttttaactcaaaatctttgaa 282  Q
    ||||| ||||| ||| |||| |||| | ||| |||  ||| || ||||||| |||||||||||| ||||||||||| || |||||  ||||||||||  |    
T  45956838 gtttagacatggtgaggttacgatactctttacttgtgatatataaagctataacttcgtgcttctttcaaacaaactgatttaatgcaaaatctttaga 45956937  T
Q  283 agtgaaacttgatctatttt 302  Q
    ||| ||| ||||||| ||||    
T  45956938 agtaaaaattgatctctttt 45956957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 9 - 52
Target Start/End: Complemental strand, 12865783 - 12865740
Alignment:
Q  9 tgatttagagttatgattatttgggtgatgcttcaagctcacct 52  Q
    |||||| |||||| ||||||||||||||||||||||||||||||    
T  12865783 tgatttcgagttaggattatttgggtgatgcttcaagctcacct 12865740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 167 - 297
Target Start/End: Original strand, 23103842 - 23103972
Alignment:
Q  167 ctaaacctcttcctgtggtttaaacatgatgaagttatgatattatttgcttaagattta-aaagctacaacttcgtgcttttttcaaacaaattgtttt 265  Q
    ||||||| |||| ||| ||||| |||||| || ||||||||| | |||| ||  |||||| ||||||| |  ||| | ||| |||||||||||||| |||    
T  23103842 ctaaaccccttcttgtcgtttagacatgacgatgttatgatactctttgtttgcgatttataaagctatag-ttcctacttctttcaaacaaattgattt 23103940  T
Q  266 aactcaaaatctttgaaagtgaaacttgatct 297  Q
    ||||||||||||||||| || |||||| ||||    
T  23103941 aactcaaaatctttgaacgtaaaacttaatct 23103972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 243 - 308
Target Start/End: Original strand, 18152143 - 18152208
Alignment:
Q  243 gcttttttcaaacaaattgttttaactcaaaatctttgaaagtgaaacttgatctattttgctttt 308  Q
    |||| ||||||||||| |||||||| | ||||||||||||||| |||| |||||| |||| |||||    
T  18152143 gcttctttcaaacaaagtgttttaaataaaaatctttgaaagtaaaacatgatctcttttactttt 18152208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 115; Significance: 2e-58; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 6 - 312
Target Start/End: Complemental strand, 27467402 - 27467093
Alignment:
Q  6 tagtgatttagagttatgattatttgggtgatgcttcaagctcacctttat--ttcttggattgtaatatatcattagcactattttatctatcaattta 103  Q
    |||||||||||||||| |||||||||||||||| ||||||||||||||  |  | ||||||||| |||||   |||| | ||||||||||| ||||||||    
T  27467402 tagtgatttagagttaggattatttgggtgatgtttcaagctcaccttcttcctgcttggattgcaatattctattaactctattttatctttcaattta 27467303  T
Q  104 gcttttcttgattttatttatgttgcatattaccttcatcttcgcggttaaactcatcatgaactaaacctcttcctgtggtttaaacatgatgaagtta 203  Q
    | ||||| || ||||||||||||||||| | ||| ||||||| | |||| |||| |||||||  |||||| ||||| |||||||| ||||||||| ||||    
T  27467302 gtttttcatgtttttatttatgttgcatttcaccctcatctttgtggttgaacttatcatgagttaaaccccttcccgtggtttagacatgatgaggtta 27467203  T
Q  204 tgatattatttgcttaagattta-aaagctacaacttcgtgcttttttcaaacaaattgttttaactcaaaatctttgaaagtgaaacttgatctatttt 302  Q
    ||||| | |||| |||||||||| || | || | ||| |||||| ||||||| ||  |||||||||| |||||| |||||||||||||||||||| ||||    
T  27467202 tgatactctttgtttaagatttataacgttatatcttggtgcttctttcaaaaaatctgttttaactaaaaatccttgaaagtgaaacttgatctctttt 27467103  T
Q  303 gcttttgatg 312  Q
     |||||||||    
T  27467102 acttttgatg 27467093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 98 - 264
Target Start/End: Complemental strand, 17558386 - 17558219
Alignment:
Q  98 aatttagcttttcttgattttatttatgttgcatattaccttcatcttcgcggttaaactcatcatgaactaaacctcttcctgtggtttaaacatgatg 197  Q
    ||||||||||||| || ||||||||||||| ||| | | ||||| ||    |||||| |||||||||| || ||||  ||| |||| |||| |||| |||    
T  17558386 aatttagcttttcatgtttttatttatgtttcatttaatcttcacctctatggttaagctcatcatgagctgaacccattcttgtgttttagacattatg 17558287  T
Q  198 aagttatgatattatttgcttaagattta-aaagctacaacttcgtgcttttttcaaacaaattgttt 264  Q
    | ||||||||||| ||||| ||||||||| ||||||| |||||| ||||| |||||||||| ||||||    
T  17558286 aggttatgatattctttgcataagatttataaagctataacttcatgcttctttcaaacaatttgttt 17558219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 138 - 257
Target Start/End: Complemental strand, 19322029 - 19321910
Alignment:
Q  138 ttcatcttcgcggttaaactcatcatgaactaaacctcttcctgtggtttaaacatgatgaagttatgatattatttgcttaagattt-aaaagctacaa 236  Q
    |||||||| | |||||| |||||||||||||||||| ||||| || ||||  || ||| || ||||||||||| || || ||||||||  ||||||| |     
T  19322029 ttcatctttgtggttaagctcatcatgaactaaaccccttcc-gtagttttgacgtgacgaggttatgatatttttcgcgtaagatttgtaaagctatag 19321931  T
Q  237 cttcgtgcttttttcaaacaa 257  Q
    |||||||||| ||||||||||    
T  19321930 cttcgtgcttatttcaaacaa 19321910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 256 - 316
Target Start/End: Original strand, 10889081 - 10889141
Alignment:
Q  256 aaattgttttaactcaaaatctttgaaagtgaaacttgatctattttgcttttgatgatat 316  Q
    |||||||||||| |||||||||| |||||| ||| ||||||  |||| |||||||||||||    
T  10889081 aaattgttttaattcaaaatcttggaaagtcaaatttgatcacttttacttttgatgatat 10889141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 200 - 296
Target Start/End: Complemental strand, 9789788 - 9789691
Alignment:
Q  200 gttatgatattatttgcttaagatttaaa-agctacaacttcgtgcttttttcaaacaaattgttttaactcaaaatctttgaaagtgaaacttgatc 296  Q
    ||||||||||| || | ||| |||||||| || || | ||||||| || |||||||||||   ||||||||||||||  |||||||| ||||||||||    
T  9789788 gttatgatattcttcggttatgatttaaagagttatagcttcgtgtttctttcaaacaaacatttttaactcaaaatgcttgaaagttaaacttgatc 9789691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 97; Significance: 1e-47; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 6 - 290
Target Start/End: Original strand, 17468905 - 17469192
Alignment:
Q  6 tagtgatttagagttatgattatttgggtgatgcttcaagctcacctttat--ttcttggattgtaatatatcattagcactattttatctatcaattta 103  Q
    |||||||||| |||||  ||||||| ||| || |||||||||||||| | |  ||||||||||||||| ||| | |||| ||||||||| ||| ||||||    
T  17468905 tagtgatttaaagttagtattattttggttattcttcaagctcacctatttccttcttggattgtaatctattactagctctattttatatattaattta 17469004  T
Q  104 gcttttcttgattttatttatgttgcatattaccttcatcttcgcggttaaactcatcatgaactaaacctcttcctgtggtttaaacatgatgaagtta 203  Q
    | ||||| || ||| ||||||||||||| |||||  |||||||| ||||||  || |||||||||||||| |||| ||||||||| ||||||||  ||||    
T  17469005 gtttttcatgttttcatttatgttgcattttacccccatcttcgtggttaagttcgtcatgaactaaaccccttcttgtggtttagacatgatgtcgtta 17469104  T
Q  204 tgatattatttgcttaag-atttaaaagctacaacttcgtgcttttttcaaacaaattgttttaactcaaaatctttgaaagtgaaac 290  Q
    | ||||| ||||||||||  ||| |||| || | |||   |||| |||||||||||||| ||||||||||||||||| ||||||||||    
T  17469105 taatattctttgcttaagttttttaaagttatagcttttcgcttctttcaaacaaattggtttaactcaaaatctttaaaagtgaaac 17469192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 88 - 307
Target Start/End: Original strand, 16511191 - 16511412
Alignment:
Q  88 tttatctatcaatttagcttttcttgattttatttatgttgcatattaccttcatcttcgcggttaaactcatcatgaactaaacctc-ttcctgtggtt 186  Q
    ||||||||||||||||||||||| || ||| |||||||||  || | | ||||| ||| | |||| |||||| ||||| ||||||| | ||  |||||||    
T  16511191 tttatctatcaatttagcttttcatgttttcatttatgttttatttcatcttcacctttgtggttcaactcaccatgagctaaaccccttttttgtggtt 16511290  T
Q  187 taaacatgatgaagttatgatattatttgcttaagattta-aaagctacaacttcgtgcttttttcaaacaaattgttttaactcaaaatctttgaaagt 285  Q
    ||  |||||||| ||||||||| | |||| |||||||||| |||| |  |   ||| |||| ||||||||||| |  ||||||| ||||||||||||| |    
T  16511291 tagccatgatgaggttatgatactctttggttaagatttataaaggtctagtgtcgcgcttctttcaaacaaacttatttaactaaaaatctttgaaaat 16511390  T
Q  286 gaaacttgatctattttgcttt 307  Q
     ||| |||| || |||||||||    
T  16511391 aaaatttgacctcttttgcttt 16511412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 181 - 228
Target Start/End: Original strand, 25540803 - 25540850
Alignment:
Q  181 gtggtttaaacatgatgaagttatgatattatttgcttaagatttaaa 228  Q
    ||||||||  |||||||| |||||||||||||||||||||||||||||    
T  25540803 gtggtttaggcatgatgatgttatgatattatttgcttaagatttaaa 25540850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 91; Significance: 5e-44; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 6 - 312
Target Start/End: Complemental strand, 12110071 - 12109762
Alignment:
Q  6 tagtgatttagagttatgattatttgggtgatgcttcaagctcacct--ttatttcttggattgtaatatatcattagcactattttatctatcaattta 103  Q
    |||||||||||||||| |||||||||||| |||||||||||||||||  ||  || ||| |||||| | | |   ||||  |||||||||||  ||||||    
T  12110071 tagtgatttagagttaggattatttgggttatgcttcaagctcacctacttccttattgaattgtattctcttgctagctatattttatctactaattta 12109972  T
Q  104 gcttttcttgattttatttatgttgcatattaccttcatcttcgcggttaaactcatcatgaactaaacctcttcctgtggtttaaacatgatgaagtta 203  Q
    ||||||| || ||| || ||| || ||| | ||||||||||| | | |||| ||||| |||| |||||||||||| ||||||||| |||||||||  | |    
T  12109971 gcttttcatgttttcatctatattacatttcaccttcatctttgtgattaagctcattatgagctaaacctcttcttgtggtttagacatgatgagatga 12109872  T
Q  204 tgatattatttgcttaagattta-aaagctacaacttcgtgcttttttcaaacaaattgttttaactcaaaatctttgaaagtgaaacttgatctatttt 302  Q
    ||||||| ||| || | |||||| |||||| || |||  ||||| |||||||||| ||||| |||||||||| |||| ||||||||||||||||| ||||    
T  12109871 tgatattcttttctcaggatttataaagctgcatctttatgcttctttcaaacaatttgttgtaactcaaaacctttaaaagtgaaacttgatctctttt 12109772  T
Q  303 gcttttgatg 312  Q
     |||||||||    
T  12109771 acttttgatg 12109762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 138 - 308
Target Start/End: Original strand, 4225494 - 4225665
Alignment:
Q  138 ttcatcttcgcggttaaactcatcatgaactaaacctcttcctgtggtttaaacatgatgaagttatgatattatttgcttaagattta-aaagctacaa 236  Q
    |||||||||| || ||| |||||||||| ||||||| |||| ||| ||||| ||||||||| ||||||||||| ||||||| ||||||| |||  || |     
T  4225494 ttcatcttcgtggataagctcatcatgagctaaaccccttcttgtagtttagacatgatgaggttatgatattctttgctttagatttataaaattatag 4225593  T
Q  237 cttcgtgcttttttcaaacaaattgttttaactcaaaatctttgaaagtgaaacttgatctattttgctttt 308  Q
    |||||||||| ||||||||||||||||||||||||| |||||| ||||||||| ||||||| ||||||||||    
T  4225594 cttcgtgcttatttcaaacaaattgttttaactcaagatctttaaaagtgaaaattgatctcttttgctttt 4225665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 8 - 294
Target Start/End: Complemental strand, 7355009 - 7354715
Alignment:
Q  8 gtgatttagagttatgattatttgggtgatgcttcaagctcac--ctttatttcttggattgtaatatatcattagcactattttatctatcaatttagc 105  Q
    |||||||| ||||| ||||| ||  | ||||||| ||||||||  ||||  |||||||||||||| || | |||||   ||||||||||||||||||| |    
T  7355009 gtgatttatagttaggattacttacgcgatgcttaaagctcacatctttccttcttggattgtaaaatgttattagttttattttatctatcaatttaac 7354910  T
Q  106 ttttcttgattttatttatgttgcatattaccttcatcttc------gcggttaaactcatcatgaactaaacctcttcctgtggtttaaacatgatgaa 199  Q
    ||||| || ||| |||||| || ||| | | ||||||||||      |||||||| |||||||||| ||||||| |||| ||||||||| |||||| ||     
T  7354909 ttttcatgttttcatttatatttcatttcatcttcatcttcatcttcgcggttaagctcatcatgagctaaacc-cttcttgtggtttagacatgacgag 7354811  T
Q  200 gttatgatattatttgcttaagattta-aaagctacaacttcgtgcttttttcaaacaaattgttttaactcaaaatctttgaaagtgaaacttga 294  Q
    ||||  ||||| ||||||||||| ||| ||||| | | ||| ||| || |||||||||||||||||| ||||||||||||||||||||||| ||||    
T  7354810 gttagcatattctttgcttaagacttataaagcaatatctttgtgtttctttcaaacaaattgttttcactcaaaatctttgaaagtgaaatttga 7354715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 84 - 312
Target Start/End: Complemental strand, 19940967 - 19940738
Alignment:
Q  84 ctattttatctatcaatttagcttttcttgattttatttatgttgcatattaccttcatcttcgcggttaaactcatcatgaactaaacctcttcctgtg 183  Q
    ||||||||||| ||||||||||||||| || ||| |||||| || ||| | |||||||||| || |||| | |||||||||| ||||||| |||| ||||    
T  19940967 ctattttatctctcaatttagcttttcatgttttcatttatttttcatttcaccttcatctccgaggtttagctcatcatgagctaaaccacttcttgtg 19940868  T
Q  184 gtttaaacatgatgaagttatgatattatttgcttaagattta-aaagctacaacttcgtgcttttttcaaacaaattgttttaactcaaaatctttgaa 282  Q
    | ||||| | || |  ||||||||||| ||||||||| ||| | |||  || | |||||||||| ||||||| |||   |||||||||||||||||||||    
T  19940867 gattaaatacgacggggttatgatattctttgcttaaaattaataaaattatagcttcgtgcttctttcaaataaaccattttaactcaaaatctttgaa 19940768  T
Q  283 agtgaaacttgatctattttgcttttgatg 312  Q
    ||| |||| |||||| |||| |||||||||    
T  19940767 agtaaaacatgatctcttttacttttgatg 19940738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 85 - 312
Target Start/End: Original strand, 10179423 - 10179651
Alignment:
Q  85 tattttatctatcaatttagcttttcttgattttatttatgttgcatattaccttcatcttcgcggttaaactcatcatgaactaaacctcttcctgtgg 184  Q
    ||||||||||||| |||||||||||  || ||||||||||||| ||| | | || |||||    |||||  ||||| |||| ||||||||||   | ||     
T  10179423 tattttatctatctatttagctttttatgtttttatttatgtttcatttcatctccatctctaaggttag-ctcattatgagctaaacctctctttatga 10179521  T
Q  185 tttaaacatgatgaagttatgatattatttgcttaagattta-aaagctacaacttcgtg-cttttttcaaacaaattgttttaactcaaaatctttgaa 282  Q
    |||| ||||||||| ||||||||| | ||||||||||||||| |||| || ||||||  | ||| ||||||||||||| |||||||||||||||||| ||    
T  10179522 tttagacatgatgaggttatgataatctttgcttaagatttataaagttataacttcacgacttctttcaaacaaattattttaactcaaaatctttaaa 10179621  T
Q  283 agtgaaacttgatctattttgcttttgatg 312  Q
    || | || ||||||| |||| |||||||||    
T  10179622 agggtaaattgatctcttttacttttgatg 10179651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 6 - 97
Target Start/End: Original strand, 50688537 - 50688630
Alignment:
Q  6 tagtgatttagagttatgattatttgggtgatgcttcaagctcac--ctttatttcttggattgtaatatatcattagcactattttatctatc 97  Q
    |||||||||||||||||||||| || |||||| ||||||||||||  ||||| ||||||||||||||| || ||||| | ||||||||||||||    
T  50688537 tagtgatttagagttatgattactttggtgatacttcaagctcacctctttacttcttggattgtaatctaccattaactctattttatctatc 50688630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 248 - 312
Target Start/End: Complemental strand, 44344395 - 44344331
Alignment:
Q  248 tttcaaacaaattgttttaactcaaaatctttgaaagtgaaacttgatctattttgcttttgatg 312  Q
    |||||||||||||||||||||| ||||| ||||||||| ||||||||||| ||||||||||||||    
T  44344395 tttcaaacaaattgttttaacttaaaatatttgaaagtaaaacttgatctcttttgcttttgatg 44344331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 243 - 307
Target Start/End: Complemental strand, 21201821 - 21201757
Alignment:
Q  243 gcttttttcaaacaaattgttttaactcaaaatctttgaaagtgaaacttgatctattttgcttt 307  Q
    |||| |||||||||||  ||||||||||||||||||||||||| ||||| ||||| |||||||||    
T  21201821 gcttctttcaaacaaaccgttttaactcaaaatctttgaaagtaaaactcgatctcttttgcttt 21201757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 243 - 307
Target Start/End: Complemental strand, 27258961 - 27258897
Alignment:
Q  243 gcttttttcaaacaaattgttttaactcaaaatctttgaaagtgaaacttgatctattttgcttt 307  Q
    |||| |||||||||||  ||||||||||||||||||||||||| ||||| | ||| |||||||||    
T  27258961 gcttctttcaaacaaacagttttaactcaaaatctttgaaagtaaaactcggtctcttttgcttt 27258897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 138 - 226
Target Start/End: Original strand, 50688637 - 50688725
Alignment:
Q  138 ttcatcttcgcggttaaactcatcatgaactaaacctcttcctgtggtttaaacatgatgaagttatgatattatttgcttaagattta 226  Q
    |||||||||| |||||| || ||||| || |||||| |||| ||| ||||| ||||||||| ||||||||||| || | ||||||||||    
T  50688637 ttcatcttcgtggttaagcttatcataaattaaaccccttcttgtagtttagacatgatgaggttatgatatttttggtttaagattta 50688725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 248 - 303
Target Start/End: Original strand, 35945142 - 35945197
Alignment:
Q  248 tttcaaacaaattgttttaactcaaaatctttgaaagtgaaacttgatctattttg 303  Q
    ||||||||||| || ||| ||||||||| ||||||||| |||||||||||||||||    
T  35945142 tttcaaacaaactgatttcactcaaaatatttgaaagtaaaacttgatctattttg 35945197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 149 - 278
Target Start/End: Original strand, 20570632 - 20570762
Alignment:
Q  149 ggttaaactcatcatgaactaaacctcttcctgtggtttaaacatgatgaagttatgatattatttgcttaagattta-aaagctacaacttcgtgcttt 247  Q
    |||| |||||||||||| ||||||  |||| ||||||||| ||||| ||| ||||||||||  ||| |||  ||| || |||| || | |||| |||||     
T  20570632 ggttcaactcatcatgagctaaacaccttcttgtggtttagacatggtgaggttatgatatcttttacttgcgatatataaagttatagcttcatgcttc 20570731  T
Q  248 tttcaaacaaattgttttaactcaaaatctt 278  Q
    ||||||||||| |  ||||||| ||||||||    
T  20570732 tttcaaacaaactaatttaacttaaaatctt 20570762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 248 - 285
Target Start/End: Complemental strand, 2916371 - 2916334
Alignment:
Q  248 tttcaaacaaattgttttaactcaaaatctttgaaagt 285  Q
    |||||||||||||||||||||||||  |||||||||||    
T  2916371 tttcaaacaaattgttttaactcaatctctttgaaagt 2916334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 90; Significance: 2e-43; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 11 - 308
Target Start/End: Original strand, 15244299 - 15244599
Alignment:
Q  11 atttagagttatgattatttgggtgatgcttcaagctcacct--ttatttcttggattgtaatatatcattagcactattttatctatcaatttagcttt 108  Q
    |||||||| || |||||||| ||||||| || ||||||||||  ||  ||  ||||||||||| |   |||| |  |||||||||||||||||||| |||    
T  15244299 atttagagctaggattatttaggtgatgatttaagctcacctccttcctttgtggattgtaatcttctattaactatattttatctatcaatttagtttt 15244398  T
Q  109 tcttgattttatttatgttgcatattaccttcatcttcgcggttaaactcatcatgaactaaacctcttcctgtggtttaaacatgatgaagttatgata 208  Q
    || || ||| ||||||||||||| | || | |||||| | |||| |  ||||| |||  |||||| |||| || |||||| ||||||||| |||||||||    
T  15244399 tcatgttttcatttatgttgcatttcacatacatctttgtggttgagttcatcttgagttaaaccccttcttgaggtttagacatgatgaggttatgata 15244498  T
Q  209 ttatttgcttaagattta-aaagctacaacttcgtgcttttttcaaacaaattgttttaactcaaaatctttgaaagtgaaacttgatctattttgcttt 307  Q
    || |||||||||| |||| ||||||| | |||||||||  ||||||||||| |||||||||| |||||| |||||||||||||||||||| |||| ||||    
T  15244499 ttctttgcttaaggtttataaagctatagcttcgtgctcctttcaaacaaactgttttaactaaaaatcattgaaagtgaaacttgatctcttttacttt 15244598  T
Q  308 t 308  Q
    |    
T  15244599 t 15244599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 6 - 240
Target Start/End: Original strand, 19709277 - 19709508
Alignment:
Q  6 tagtgatttagagttatgattatttgggtgatgcttcaagctcacct--ttatttcttggattgtaatatatcattagcactattttatctatcaattta 103  Q
    |||||||||| ||||| ||||| || ||||||||||||||||| |||  || ||| ||||| |||||||| |  ||| | ||||||||||||| |||||     
T  19709277 tagtgatttaaagttaggattacttaggtgatgcttcaagctcgcctctttctttgttggagtgtaatatgttcttaactctattttatctattaattt- 19709375  T
Q  104 gcttttcttgattttatttatgttgcatattaccttcatcttcgcggttaaactcatcatgaactaaacctcttcctgtggtttaaacatgatgaagtta 203  Q
        ||| || ||| ||||||||| ||| | | ||||||||||| |||||| |||||||||| ||||||| |||| ||||||||| ||||||||| ||||    
T  19709376 ----ttcatgttttcatttatgtttcatttcatcttcatcttcgtggttaagctcatcatgagctaaacc-cttcttgtggtttagacatgatgaggtta 19709470  T
Q  204 tgatattatttgcttaagatttaaa-agctacaacttc 240  Q
    ||||||| || |||||||||||||| ||||| ||||||    
T  19709471 tgatattcttcgcttaagatttaaagagctataacttc 19709508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 85 - 310
Target Start/End: Complemental strand, 39440557 - 39440329
Alignment:
Q  85 tattttatctatcaatttagcttttcttgattttatttatgttgcatattaccttcatcttcgcggttaaactcatcatgaactaaacctcttcctgtgg 184  Q
    |||||||| ||||||||||| ||||| || ||||||||||||| ||| | | ||||||||    | || | ||| || |||  |||||| |||| |||||    
T  39440557 tattttatatatcaatttagtttttcatgtttttatttatgtttcatttcatcttcatctctaagtttcagctcctcgtgagttaaaccccttcttgtgg 39440458  T
Q  185 tttaaacatgatgaagttatgatattatttgcttaagattta-aaagctacaacttcgtgcttttttcaaacaaa--ttgttttaactcaaaatctttga 281  Q
    |||| ||| ||||| ||||||||||| ||||||||||||||| ||||||| | ||||| |||| |||||||||||   | |||||||||||||||||  |    
T  39440457 tttagacaagatgaggttatgatattctttgcttaagatttataaagctatagcttcgcgcttctttcaaacaaactatattttaactcaaaatcttcaa 39440358  T
Q  282 aagtgaaacttgatctattttgcttttga 310  Q
    |||| |||||| |||| |||| |||||||    
T  39440357 aagtaaaactttatctcttttacttttga 39440329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 137 - 308
Target Start/End: Original strand, 6242798 - 6242967
Alignment:
Q  137 cttcatcttcgcggttaaactcatcatgaactaaacctcttcctgtggtttaaacatgatgaagttatgatattatttgcttaagattta-aaagctaca 235  Q
    ||||||||||| ||||||||||| ||||| ||||| | |||   ||| |||| | |||||||  |||||||| ||||||||||||||||| |||| || |    
T  6242798 cttcatcttcgtggttaaactcaccatgagctaaatccctt---gtgatttagatatgatgagattatgatagtatttgcttaagatttataaagttata 6242894  T
Q  236 acttcgtgcttttttcaaacaaattgttttaactcaaaatctttgaaagtgaaacttgatctattttgctttt 308  Q
    | ||   || |||||||||||||||||||||||||||||||||  |||||||||||| |||| |||| |||||    
T  6242895 aatttacgcctttttcaaacaaattgttttaactcaaaatcttcaaaagtgaaacttaatctcttttactttt 6242967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 88 - 297
Target Start/End: Original strand, 21502014 - 21502222
Alignment:
Q  88 tttatctatcaatttagcttttcttgattttatttatgttgcatattaccttcatcttcgcggttaaactcatcatgaactaaacctcttcctgtggttt 187  Q
    ||||||||| |||||| |||||| || ||| |||||||||  || | | || |||||||  ||||   |||| ||||| ||||||| |||| ||||||||    
T  21502014 tttatctattaatttaacttttcatgttttcatttatgttttatttcatctccatcttcttggttctgctcaccatgagctaaaccccttcttgtggttt 21502113  T
Q  188 aaacatgatgaagttatgatattatttgcttaagattta-aaagctacaacttcgtgcttttttcaaacaaattgttttaactcaaaatctttgaaagtg 286  Q
    | ||||| |||  |||||||| | |||||||| |||| | ||||||| |  |||| |||| |||||| |||| || ||||||||||  |||||||||||     
T  21502114 agacatggtgagattatgatactctttgcttaggattcataaagctatagtttcgcgcttctttcaagcaaactgatttaactcaa--tctttgaaagta 21502211  T
Q  287 aaacttgatct 297  Q
    |||||||||||    
T  21502212 aaacttgatct 21502222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 243 - 312
Target Start/End: Complemental strand, 47900162 - 47900093
Alignment:
Q  243 gcttttttcaaacaaattgttttaactcaaaatctttgaaagtgaaacttgatctattttgcttttgatg 312  Q
    |||| ||||||||||| | |||||||||||||  ||| ||||||||| ||||||||||||||||||||||    
T  47900162 gcttctttcaaacaaactcttttaactcaaaacatttaaaagtgaaatttgatctattttgcttttgatg 47900093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 137 - 296
Target Start/End: Original strand, 33078950 - 33079110
Alignment:
Q  137 cttcatcttcgcggttaaactcatcatgaactaaacctcttcctgtggtttaaacatgatgaagttatgatattatttgcttaagattta-aaagctaca 235  Q
    ||||||||| | |||| | |||| ||||| ||||||| |||| ||||||||| ||| | ||| ||||||||||| ||| ||||||||||| ||||||  |    
T  33078950 cttcatctttgtggttcatctcaccatgagctaaaccccttcttgtggtttagacacggtgaggttatgatattctttacttaagatttataaagctgta 33079049  T
Q  236 acttcgtgcttttttcaaac-aaattgttttaactcaaaatctttgaaagtgaaacttgatc 296  Q
     |||||||||| ||| || | |||||||||| | |||||| |||| ||||  ||||||||||    
T  33079050 gcttcgtgcttctttgaatcaaaattgtttt-attcaaaaactttaaaagcaaaacttgatc 33079110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 13 - 165
Target Start/End: Complemental strand, 47900331 - 47900178
Alignment:
Q  13 ttagagttatgattatttgggtgatgcttcaagctcac--ctttatttcttggattgtaatatatcattagcactattttatctatcaatttagcttttc 110  Q
    |||||||||  |||||||||||||||||||| ||||||  ||||  ||||||||||||||   || | |||| ||| ||||||||| |||||| |||||     
T  47900331 ttagagttagtattatttgggtgatgcttcatgctcacctctttccttcttggattgtaaacaattactagctcta-tttatctattaatttaactttta 47900233  T
Q  111 ttgattttatttatgttgcatattaccttcatcttcgcggttaaactcatcatga 165  Q
     || ||| ||||||||||||| | || | |||||||| | |||  ||||||||||    
T  47900232 atgttttcatttatgttgcatttcacttccatcttcgtgtttatgctcatcatga 47900178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 6 - 110
Target Start/End: Original strand, 15731830 - 15731936
Alignment:
Q  6 tagtgatttagagttatgattatttgggtgatgcttcaagctcacctttatttcttg---gattgtaatatatcattagcactattttatctatcaattt 102  Q
    |||||||||||||||| ||||| || | || ||||||||||||||| ||||| ||||   ||||||||| | | |||| | |||| ||||||||||||||    
T  15731830 tagtgatttagagttaggattacttagatgttgcttcaagctcacc-ttattccttgtttgattgtaatttgttattaactctatattatctatcaattt 15731928  T
Q  103 agcttttc 110  Q
    | ||||||    
T  15731929 aacttttc 15731936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 91 - 208
Target Start/End: Original strand, 15877893 - 15878010
Alignment:
Q  91 atctatcaatttagcttttcttgattttatttatgttgcatattaccttcatcttcgcggttaaactcatcatgaactaaacctcttcctgtggtttaaa 190  Q
    |||||| ||||||||||||| |  ||| |||||||||  || | | ||||||||||  |||| | |||| ||||| ||||||| |||| ||||||||| |    
T  15877893 atctattaatttagcttttcatattttcatttatgttttatttcatcttcatcttcaaggttcagctcaccatgagctaaaccccttcttgtggtttaga 15877992  T
Q  191 catgatgaagttatgata 208  Q
    |||| ||| |||||||||    
T  15877993 catggtgaggttatgata 15878010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 243 - 284
Target Start/End: Complemental strand, 52973582 - 52973541
Alignment:
Q  243 gcttttttcaaacaaattgttttaactcaaaatctttgaaag 284  Q
    |||| ||||||| |||||||||||||||||||||||||||||    
T  52973582 gcttctttcaaataaattgttttaactcaaaatctttgaaag 52973541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 248 - 296
Target Start/End: Original strand, 15732093 - 15732141
Alignment:
Q  248 tttcaaacaaattgttttaactcaaaatctttgaaagtgaaacttgatc 296  Q
    ||||||||||| | ||||||| |||||||||||||||| ||||||||||    
T  15732093 tttcaaacaaactattttaacccaaaatctttgaaagtaaaacttgatc 15732141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 184 - 268
Target Start/End: Original strand, 1972351 - 1972435
Alignment:
Q  184 gtttaaacatgatgaagttatgatattatttgcttaagatttaaa-agctacaacttcgtgcttttttcaaacaaattgttttaac 268  Q
    ||||| ||||||| | ||||||||||| |||| |||||||||||| ||||||||||||  |||| ||| |||| || |||||||||    
T  1972351 gtttagacatgataaggttatgatattctttg-ttaagatttaaagagctacaacttcaggcttctttaaaactaaatgttttaac 1972435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 88; Significance: 3e-42; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 6 - 296
Target Start/End: Complemental strand, 19452657 - 19452370
Alignment:
Q  6 tagtgatttagagttatgattatttgggtgatgcttcaagctcacct--ttatttcttggattgtaatatatcattagcactattttatctatcaattta 103  Q
    |||||||||||||||| ||||| ||| ||||||||||||||||||||  ||  || |||||||| ||| | | |||| |  ||||||||||||| ||||     
T  19452657 tagtgatttagagttaggattacttgagtgatgcttcaagctcacctcattccttgttggattgcaatcttttattaactatattttatctatcgatttt 19452558  T
Q  104 gcttttcttgattttatttatgttgcatattaccttcatcttcgcggttaaactcatcatgaactaaacctcttcctgtggtttaaacatgatgaagtta 203  Q
    | ||||| || ||| ||||      ||| | | || |||||| | |||||| |||||||||| ||||||| |||| |||   ||| ||||||||| ||||    
T  19452557 gattttcatgttttcattt------catttcatctgcatctttgtggttaagctcatcatgagctaaaccccttcttgtacattatacatgatgaggtta 19452464  T
Q  204 tgatattatttgcttaagattta-aaagctacaacttcgtgcttttttcaaacaaattgttttaactcaaaatctttgaaagtgaaacttgatc 296  Q
    ||||||| ||||||||| ||||| ||| ||| ||||||| |||| ||||||||||| |||||||||||||||||||||||||||||||||||||    
T  19452463 tgatattctttgcttaatatttataaatctataacttcgcgcttctttcaaacaaactgttttaactcaaaatctttgaaagtgaaacttgatc 19452370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 6 - 296
Target Start/End: Original strand, 19528419 - 19528706
Alignment:
Q  6 tagtgatttagagttatgattatttgggtgatgcttcaagctcacct--ttatttcttggattgtaatatatcattagcactattttatctatcaattta 103  Q
    |||||||||||||||| ||||| ||| ||||||||||||||||||||  ||  || |||||||| ||| | | |||| |  ||||||||||||| ||||     
T  19528419 tagtgatttagagttaggattacttgagtgatgcttcaagctcacctcattccttgttggattgcaatcttttattaactatattttatctatcgatttt 19528518  T
Q  104 gcttttcttgattttatttatgttgcatattaccttcatcttcgcggttaaactcatcatgaactaaacctcttcctgtggtttaaacatgatgaagtta 203  Q
    | ||||| || ||| ||||      ||| | | || |||||| | |||||| |||||||||| ||||||| |||| |||   ||| ||||||||| ||||    
T  19528519 gattttcatgttttcattt------catttcatctgcatctttgtggttaagctcatcatgagctaaaccccttcttgtacattatacatgatgaggtta 19528612  T
Q  204 tgatattatttgcttaagattta-aaagctacaacttcgtgcttttttcaaacaaattgttttaactcaaaatctttgaaagtgaaacttgatc 296  Q
    ||||||| ||||||||| ||||| ||| ||| ||||||| |||| ||||||||||| |||||||||||||||||||||||||||||||||||||    
T  19528613 tgatattctttgcttaatatttataaatctataacttcgcgcttctttcaaacaaactgttttaactcaaaatctttgaaagtgaaacttgatc 19528706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 6 - 267
Target Start/End: Complemental strand, 13217994 - 13217730
Alignment:
Q  6 tagtgatttagagttatgattatttgggtgatgcttcaagctcacctttat--ttcttggattgtaatatatcattagcactattttatctatcaattta 103  Q
    |||||||||||||||| ||||| ||  |||||||||||| ||||||| |    || || ||||| ||| | | |||| | |||||||||| |||||||||    
T  13217994 tagtgatttagagttaggattacttaagtgatgcttcaatctcacctcttcccttgttagattgcaatttgttattaactctattttatccatcaattta 13217895  T
Q  104 gcttttcttgattttatttatgttgcatattaccttcatcttcgcggttaaactcatcatgaactaaacctcttcctgtggtttaaacatgatgaagtta 203  Q
    | ||||| || ||| ||||||||| ||| | | ||||||||| | ||||||  ||||||||| |||||||| |||  ||| |||| | ||||||| |||     
T  13217894 gtttttcatgttttcatttatgtttcatttcatcttcatctttgtggttaagttcatcatgagctaaaccttttctcgtgctttagaaatgatgaggttg 13217795  T
Q  204 tgatattatttgcttaagattta-aaagctacaacttcgtgcttttttcaaacaaattgttttaa 267  Q
    ||||||| ||||| ||| ||||| |||| || | |||||||||| ||||||||||||||||||||    
T  13217794 tgatattctttgcataaaatttataaagttatagcttcgtgcttctttcaaacaaattgttttaa 13217730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 85 - 226
Target Start/End: Complemental strand, 30122420 - 30122280
Alignment:
Q  85 tattttatctatcaatttagcttttcttgattttatttatgttgcatattaccttcatcttcgcggttaaactcatcatgaactaaacctcttcctgtgg 184  Q
    |||||||| | |||| |||| ||||| || ||| ||||||||||||| | ||||||||||||| |||||| |||||||||| |||| ||| ||| |||||    
T  30122420 tattttatatttcaaattagtttttcatgttttcatttatgttgcatttcaccttcatcttcgtggttaagctcatcatgagctaaccct-ttcttgtgg 30122322  T
Q  185 tttaaacatgatgaagttatgatattatttgcttaagattta 226  Q
    |||| | || |||| |||||||||||||||  ||||||||||    
T  30122321 tttagatataatgaggttatgatattattttattaagattta 30122280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 252 - 312
Target Start/End: Complemental strand, 30117637 - 30117577
Alignment:
Q  252 aaacaaattgttttaactcaaaatctttgaaagtgaaacttgatctattttgcttttgatg 312  Q
    ||||||| |||||||||||||||||||  ||||||||||||||||||||||||||||||||    
T  30117637 aaacaaactgttttaactcaaaatcttcaaaagtgaaacttgatctattttgcttttgatg 30117577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 137 - 296
Target Start/End: Original strand, 7635312 - 7635473
Alignment:
Q  137 cttcatcttcgcggttaaactcatcatgaactaaacctcttcctgtggtttaaacatgatgaagttatgatattatttgcttaagatttaa-aagctaca 235  Q
    |||||||| || |||||| ||||| ||||  |||||  |||| |||| |||| ||||||||| ||||||||| | ||||||||||||||||  || || |    
T  7635312 cttcatctgcgtggttaagctcatgatgagttaaactccttcttgtgttttagacatgatgaggttatgataatctttgcttaagatttaaggagttata 7635411  T
Q  236 acttcgtgcttttttcaaac-aaattgttttaactcaaaatctttgaaagtgaaacttgatc 296  Q
    | || |||||| |||||||| ||| |||||||||||||||||||| ||| | |||| |||||    
T  7635412 attttgtgcttctttcaaacaaaaatgttttaactcaaaatctttaaaaataaaacatgatc 7635473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 80; Significance: 2e-37; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 9 - 296
Target Start/End: Original strand, 14274758 - 14275046
Alignment:
Q  9 tgatttagagttatgattatttgggtgatgcttcaagctcacct--ttatttcttggattgtaatatatcattagcactattttatctatcaatttagct 106  Q
    ||||||| ||||| ||||||||  ||||||||||||||||||||  || || || ||||| ||||||   | || | ||||||||||||||||||||| |    
T  14274758 tgatttatagttaagattatttaagtgatgcttcaagctcacctcatttttgctaggattataatattctagtaactctattttatctatcaatttagtt 14274857  T
Q  107 tttcttgattttatttatgttgcatattaccttcatcttcgcggttaaactcatcatgaactaaacctcttcctgtggtttaaacatgatgaagttatga 206  Q
    || | || ||| ||||||||||||| | | || ||| |||| |||||| ||| ||||||  |||||| |||| | ||||||| ||||||||| |||||||    
T  14274858 ttccatgttttcatttatgttgcatttcatctccattttcgtggttaagctcgtcatgacataaaccccttc-tctggtttagacatgatgaggttatga 14274956  T
Q  207 tattatttgcttaagattta-aaagctacaacttcgtgcttttttcaaacaaattgttttaactcaaaatctttgaaagtgaaacttgatc 296  Q
    |||| ||||||||||||||| |||| || | ||||| | |||||||||||||| ||||| |||  ||||||||| ||||| ||||||||||    
T  14274957 tattctttgcttaagatttataaagttatagcttcgcg-ttttttcaaacaaactgtttaaacgaaaaatctttaaaagtcaaacttgatc 14275046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0316 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: scaffold0316
Description:

Target: scaffold0316; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 227 - 283
Target Start/End: Original strand, 19465 - 19521
Alignment:
Q  227 aaagctacaacttcgtgcttttttcaaacaaattgttttaactcaaaatctttgaaa 283  Q
    ||||||| | || |||||||||||||||||||||||||| | |||||||||||||||    
T  19465 aaagctatagctccgtgcttttttcaaacaaattgtttttattcaaaatctttgaaa 19521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 149 - 296
Target Start/End: Original strand, 119771 - 119915
Alignment:
Q  149 ggttaaactcatcatgaactaaacctcttcctgtggtttaaacatgatgaagttatgatattatttgcttaagatttaaaagctacaacttcgtgctttt 248  Q
    ||||||||||||||||| |||||||   |   |||||||| ||||||||| ||||||| ||| |||||||||||||  | |||||||||||||  ||| |    
T  119771 ggttaaactcatcatgagctaaaccctgta--gtggtttagacatgatgatgttatgagattctttgcttaagattcgagagctacaacttcgcacttct 119868  T
Q  249 ttcaaacaaattgttttaactcaaaatctttgaaagtgaaacttgatc 296  Q
    || | ||||||| ||| ||  | ||| |||||||||| ||||||||||    
T  119869 tttatacaaattatttgaatgctaaa-ctttgaaagtaaaacttgatc 119915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University