View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14337_low_25 (Length: 267)
Name: NF14337_low_25
Description: NF14337
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14337_low_25 |
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Alignment Details
Target: chr2 (Bit Score: 178; Significance: 4e-96; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 16 - 250
Target Start/End: Original strand, 38399364 - 38399597
Alignment:
| Q |
16 |
ataagaaataaaaaggtaaaagaagtaaatcaaaatatacttattagtttctcatcctcgattaaactcattgtaaaaccaaatgcacagtgctttgtgg |
115 |
Q |
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|||| |||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
38399364 |
ataaaaaataaaaaggtaaaacaagtaaatcaaaatatccttattagtttctcatcctcgattaaactctttgtaaaaccaaatgcacagtgctttgtgg |
38399463 |
T |
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| Q |
116 |
ccaggcaatgggacttcaannnnnnnnattaataataaaatgttcatcctattttgactatctttctaattctattagtttctcatgctataatccccca |
215 |
Q |
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||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38399464 |
ccaggcaatgggacttcaa-tttttttattaataataaaatgttcatcctgttttgactatctttctaattctattagtttctcatgctataatccccca |
38399562 |
T |
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| Q |
216 |
aattcatcctgcaaaattgatgttgcttattaaaa |
250 |
Q |
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|||||||||| |||||||||||||||||| ||||| |
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| T |
38399563 |
aattcatcctacaaaattgatgttgcttactaaaa |
38399597 |
T |
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