View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14337_low_26 (Length: 260)

Name: NF14337_low_26
Description: NF14337
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14337_low_26
NF14337_low_26
[»] chr4 (4 HSPs)
chr4 (88-251)||(50069857-50070016)
chr4 (115-251)||(50075873-50075995)
chr4 (20-95)||(50070248-50070323)
chr4 (72-116)||(50078660-50078704)
[»] chr6 (1 HSPs)
chr6 (72-116)||(10797070-10797114)


Alignment Details
Target: chr4 (Bit Score: 123; Significance: 3e-63; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 88 - 251
Target Start/End: Complemental strand, 50070016 - 50069857
Alignment:
Q  88 tttgtgtcttcttaatcttccaatgtaatcctccaacttaccaagccttcctactatcgtcattaaacatgagtgtgcttcccagtttgttgttgttttc 187  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    |||||||||||||||||| |||||||||||||||    
T  50070016 tttgtgtcttcttaatcttccaatgtaatcctccaacttaccaagccttcctactatcgtca----acatgagtgtgcttcccaatttgttgttgttttc 50069921  T
Q  188 ttaatttaagttagcttaatttctgttgaaataaagtgttcacttgttaatttctccctttgct 251  Q
    ||||||||||||||||||||||| ||| ||||||| || |||||||||||||||||| ||||||    
T  50069920 ttaatttaagttagcttaatttccgttaaaataaattgatcacttgttaatttctccttttgct 50069857  T

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Target: chr4; HSP #2
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 115 - 251
Target Start/End: Complemental strand, 50075995 - 50075873
Alignment:
Q  115 atcctccaacttaccaagccttcctactatcgtcattaaacatgagtgtgcttcccagtttgttgttgttttcttaatttaagttagcttaatttctgtt 214  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||  |||||||||||||||||||||||||||||              ||    
T  50075995 atcctccaacttaccaagccttcctactatcgtcattaaaaatgagtgtgcttgtcagtttgttgttgttttcttaatttaagt--------------tt 50075910  T
Q  215 gaaataaagtgttcacttgttaatttctccctttgct 251  Q
    |||||||||||||||||||||||||||||| ||||||    
T  50075909 gaaataaagtgttcacttgttaatttctccttttgct 50075873  T

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Target: chr4; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 20 - 95
Target Start/End: Complemental strand, 50070323 - 50070248
Alignment:
Q  20 aatccatcctccaatttaccaagtctagctactatcatcactaaacatgaccgtgcttgctagttgtttttgtgtc 95  Q
    |||||||||||||||||||||||||||||||||||||||| | |||||||  || |||||||||| | ||||||||    
T  50070323 aatccatcctccaatttaccaagtctagctactatcatcagtgaacatgagtgttcttgctagttttctttgtgtc 50070248  T

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Target: chr4; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 72 - 116
Target Start/End: Complemental strand, 50078704 - 50078660
Alignment:
Q  72 gtgcttgctagttgtttttgtgtcttcttaatcttccaatgtaat 116  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  50078704 gtgcttgctagttgtttttgtgtcttcttaatcttccaatgtaat 50078660  T

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Target: chr6 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 72 - 116
Target Start/End: Complemental strand, 10797114 - 10797070
Alignment:
Q  72 gtgcttgctagttgtttttgtgtcttcttaatcttccaatgtaat 116  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  10797114 gtgcttgctagttgtttttgtgtcttcttaatcttccaatgtaat 10797070  T

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