View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14337_low_3 (Length: 559)
Name: NF14337_low_3
Description: NF14337
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14337_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 519; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 519; E-Value: 0
Query Start/End: Original strand, 13 - 547
Target Start/End: Original strand, 21242674 - 21243208
Alignment:
| Q |
13 |
attctctacataacaaactttatatctaataggtaatgcaacgggttcatattcaaacttcaagagttttgaggcgttgattgaatcagcaggggaagta |
112 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21242674 |
attctctacataacaaactttatatctaataggtaatgcaacgggttcatattcaaacttcaagagttttgaggcgttgattgaatcagcaggggaagta |
21242773 |
T |
|
| Q |
113 |
acagaattaccagaaaacgatgtgaaacagaccgatacagcggcacttttgtactcatcaggaactacaggagtgagcaaaggtgtgattctcacacaca |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21242774 |
acagaattaccagaaaacgatgtgaaacagaccgatacagcggcacttttgtactcatcaggaactacaggagtgagcaaaggtgtgattctcacacaca |
21242873 |
T |
|
| Q |
213 |
agaacttcatcgcagcatcgttgatgataaacatggatgatgatttagctggggaattaaacaacgtgttcatctgcgttttaccgatgtttcatgtgtt |
312 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
21242874 |
agaacttcatcgcagcgtcgttgatgataaacatggatgatgatttagctggggaattaaacaatgtgttcatctgcgttttaccgatgtttcatgtgtt |
21242973 |
T |
|
| Q |
313 |
tggattggcggttataacatacgcacagctaaggagaggaagtaccgtggtttcgatggggaggtttgagttagagggttttttgaaggtgattgagaag |
412 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21242974 |
tggattggcggttataacatacgcacagctaaggagaggaagtaccgtggtttcgatggggaggtttgagttagagggttttttgaaggtgattgagaag |
21243073 |
T |
|
| Q |
413 |
tataaagtgacgaacttgtgggttgtgccaccgatgattcttgctttagcgaaacaaagtgtggttgggaaatatgatgtttcttctctgaagagtattg |
512 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||| |
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| T |
21243074 |
tataaagtgacgaacttgtgggttgtgccaccgatgattcttgctttagcgaaacagagtgtggttgggaaatatgatgtttcttctttgaagagtattg |
21243173 |
T |
|
| Q |
513 |
ggtctggtgctgctcctcttgggaaggaattgatg |
547 |
Q |
| |
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||||||||||||||||||||||||||||||||||| |
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| T |
21243174 |
ggtctggtgctgctcctcttgggaaggaattgatg |
21243208 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 13 - 513
Target Start/End: Original strand, 21258450 - 21258939
Alignment:
| Q |
13 |
attctctacataacaaactttatatctaataggtaatgcaacgggttcatattcaaacttcaagagttttgaggcgttgattgaatcagcaggggaagta |
112 |
Q |
| |
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|||| ||| |||||||||||||||||| |||||||||||||| |||| | |||| ||||||| |||||||||||||||||| |||||||| ||||||||| |
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| T |
21258450 |
attcgctatataacaaactttatatctgataggtaatgcaacaggttgaaattcgaacttcacgagttttgaggcgttgatagaatcagctggggaagta |
21258549 |
T |
|
| Q |
113 |
acagaattaccagaaaacgatgtgaaacagaccgatacagcggcacttttgtactcatcaggaactacaggagtgagcaaaggtgtgattctcacacaca |
212 |
Q |
| |
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|||||| ||||||||| | | ||||||||||| || | |||| |||||||||||||||||||||||||||||||||||||||| ||||| |||| |
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| T |
21258550 |
acagaaataccagaaagcaacgtgaaacagactgaca-------acttctgtactcatcaggaactacaggagtgagcaaaggtgtgatactcacccaca |
21258642 |
T |
|
| Q |
213 |
agaacttcatcgcagcatcgttgatgataaacatggatgatgatttagctggggaattaaacaacgtgttcatctgcgttttaccgatgtttcatgtgtt |
312 |
Q |
| |
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||||||||||||| | || ||||||||||||||||||||||||||||| ||||||||||| |||||| |||||||||||||||||||||||||||| |
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| T |
21258643 |
agaacttcatcgcgacttcattgatgataaacatggatgatgatttagcaggggaattaaat---gtgttcctctgcgttttaccgatgtttcatgtgtt |
21258739 |
T |
|
| Q |
313 |
tggattggcggttataacatacgcacagctaaggagaggaagtaccgtggtttcgatggggaggtttgagttagagggttttttgaaggtgattgagaag |
412 |
Q |
| |
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| |||||||||||||||||||||| |||||||||||||||||| | |||||||| | |||||| |||||||||||||| ||||||||||||||||| ||| |
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| T |
21258740 |
tagattggcggttataacatacgcgcagctaaggagaggaagtgcggtggtttcaacggggagatttgagttagaggg-tttttgaaggtgattgaaaag |
21258838 |
T |
|
| Q |
413 |
tataaagtgacgaacttgtgggttgtgccaccgatgattcttgctttagcgaaacaaagtgtggttgggaaatatgatgtttcttctctgaagagtattg |
512 |
Q |
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|||| |||||| | ||||||||||||||| |||||| ||||||||| |||||||| ||||||||||||||||||||||||||||| |||||||||||| |
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| T |
21258839 |
tatagagtgacaactttgtgggttgtgccatcgatgaatcttgctttggcgaaacagagtgtggttgggaaatatgatgtttcttcgttgaagagtattg |
21258938 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 22 - 434
Target Start/End: Original strand, 21253939 - 21254357
Alignment:
| Q |
22 |
ataacaaactttatatctaataggtaat----gcaacgggttcatattcaaacttcaagagttttgaggcgttgattgaatcagcaggggaagtaacaga |
117 |
Q |
| |
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||||||||||||| |||||||||||||| | |||||||||| |||||||||||| ||||||||| ||||||||||| ||||| | ||||||||||| |
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| T |
21253939 |
ataacaaactttacatctaataggtaattaatgtaacgggttcaaattcaaacttcaccagttttgagtcgttgattgaaacagcatgagaagtaacaga |
21254038 |
T |
|
| Q |
118 |
attaccagaaaacgatgtgaaacagaccgatacagcggcacttttgtactcatcaggaactacaggagtgagcaaaggtgtgattctcacacacaagaac |
217 |
Q |
| |
|
|||||||||||||||||||||||| | |||||||||||| | ||||||||||||||||| |||||||||||||| || ||||| || || ||||||||| |
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| T |
21254039 |
attaccagaaaacgatgtgaaacaaagcgatacagcggctttgttgtactcatcaggaacaacaggagtgagcaagggcgtgatacttacccacaagaac |
21254138 |
T |
|
| Q |
218 |
ttcatcgcagcatcgttgatgataaacatggatgatgatttagctggggaattaaacaacgtgttcatctgcgttttaccgatgt---ttcatgtgtttg |
314 |
Q |
| |
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|||| || | |||| ||||| |||||||| ||||||||||| ||||||||||||||||||||| |||||||||||||||||| ||||||||||| |
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| T |
21254139 |
gtcattgcggtggcgttaatgattaacatggacgatgatttagcaggggaattaaacaacgtgttcttctgcgttttaccgatgtttattcatgtgttta |
21254238 |
T |
|
| Q |
315 |
gattggcggttataacatacgcacagctaaggagaggaagtaccgtggtttcgatggggaggtttgagttagagggttttttgaaggtgattgagaagta |
414 |
Q |
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|||||| ||||||||||||||| |||||||||||||||||||| |||||||| | ||||||||||||||||||||| ||||||||||||||||||||| | |
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| T |
21254239 |
gattggtggttataacatacgcgcagctaaggagaggaagtacggtggtttcaacggggaggtttgagttagaggg-tttttgaaggtgattgagaagca |
21254337 |
T |
|
| Q |
415 |
taaagtgacgaacttgtggg |
434 |
Q |
| |
|
|| ||||||||| ||||||| |
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| T |
21254338 |
tagagtgacgaatttgtggg |
21254357 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 435 - 547
Target Start/End: Complemental strand, 40809348 - 40809236
Alignment:
| Q |
435 |
ttgtgccaccgatgattcttgctttagcgaaacaaagtgtggttgggaaatatgatgtttcttctctgaagagtattgggtctggtgctgctcctcttgg |
534 |
Q |
| |
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||||||||||||| | || ||| |||||||||| || |||||| || |||||| |||| | ||||| |||||| |||||||||||||||||||| |
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| T |
40809348 |
ttgtgccaccgattgtactcgctctagcgaaacatggtttggttgataagtatgatctttcgagtttgaagtatattggttctggtgctgctcctcttgg |
40809249 |
T |
|
| Q |
535 |
gaaggaattgatg |
547 |
Q |
| |
|
||| || |||||| |
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|
| T |
40809248 |
gaaagagttgatg |
40809236 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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